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Results: 1 to 20 of 45

1.

RBPmap: a web server for mapping binding sites of RNA-binding proteins.

Paz I, Kosti I, Ares M Jr, Cline M, Mandel-Gutfreund Y.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W361-7. doi: 10.1093/nar/gku406. Epub 2014 May 14.

PMID:
24829458
[PubMed - in process]
Free Article
2.

Comparative metagenomic analyses reveal viral-induced shifts of host metabolism towards nucleotide biosynthesis.

Enav H, Mandel-Gutfreund Y, Béjà O.

Microbiome. 2014 Mar 26;2(1):9. doi: 10.1186/2049-2618-2-9.

PMID:
24666644
[PubMed]
Free PMC Article
3.

Covariation between homeodomain transcription factors and the shape of their DNA binding sites.

Dror I, Zhou T, Mandel-Gutfreund Y, Rohs R.

Nucleic Acids Res. 2014 Jan;42(1):430-41. doi: 10.1093/nar/gkt862. Epub 2013 Sep 27.

PMID:
24078250
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

DRIMust: a web server for discovering rank imbalanced motifs using suffix trees.

Leibovich L, Paz I, Yakhini Z, Mandel-Gutfreund Y.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W174-9. doi: 10.1093/nar/gkt407. Epub 2013 May 17.

PMID:
23685432
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability.

Gupta SK, Kosti I, Plaut G, Pivko A, Tkacz ID, Cohen-Chalamish S, Biswas DK, Wachtel C, Waldman Ben-Asher H, Carmi S, Glaser F, Mandel-Gutfreund Y, Michaeli S.

Nucleic Acids Res. 2013 Jul;41(13):6577-94. doi: 10.1093/nar/gkt369. Epub 2013 May 10.

PMID:
23666624
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Conformational readout of RNA by small ligands.

Kligun E, Mandel-Gutfreund Y.

RNA Biol. 2013 Jun;10(6):982-9. doi: 10.4161/rna.24682. Epub 2013 Apr 16.

PMID:
23618839
[PubMed - indexed for MEDLINE]
Free Article
7.

Searching for protein signatures using a multilevel alphabet.

Hod R, Kohen R, Mandel-Gutfreund Y.

Proteins. 2013 Jun;81(6):1058-68. doi: 10.1002/prot.24261. Epub 2013 Feb 27.

PMID:
23386227
[PubMed - indexed for MEDLINE]
8.

A complex immunodeficiency is based on U1 snRNP-mediated poly(A) site suppression.

Langemeier J, Schrom EM, Rabner A, Radtke M, Zychlinski D, Saborowski A, Bohn G, Mandel-Gutfreund Y, Bodem J, Klein C, Bohne J.

EMBO J. 2012 Oct 17;31(20):4035-44. doi: 10.1038/emboj.2012.252. Epub 2012 Sep 11.

PMID:
22968171
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A novel Plasmodium falciparum SR protein is an alternative splicing factor required for the parasites' proliferation in human erythrocytes.

Eshar S, Allemand E, Sebag A, Glaser F, Muchardt C, Mandel-Gutfreund Y, Karni R, Dzikowski R.

Nucleic Acids Res. 2012 Oct;40(19):9903-16. doi: 10.1093/nar/gks735. Epub 2012 Aug 9.

PMID:
22885299
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

An integrated regulatory network reveals pervasive cross-regulation among transcription and splicing factors.

Kosti I, Radivojac P, Mandel-Gutfreund Y.

PLoS Comput Biol. 2012;8(7):e1002603. doi: 10.1371/journal.pcbi.1002603. Epub 2012 Jul 26.

PMID:
22844237
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Characterization of coding synonymous and non-synonymous variants in ADAMTS13 using ex vivo and in silico approaches.

Edwards NC, Hing ZA, Perry A, Blaisdell A, Kopelman DB, Fathke R, Plum W, Newell J, Allen CE, S G, Shapiro A, Okunji C, Kosti I, Shomron N, Grigoryan V, Przytycka TM, Sauna ZE, Salari R, Mandel-Gutfreund Y, Komar AA, Kimchi-Sarfaty C.

PLoS One. 2012;7(6):e38864. doi: 10.1371/journal.pone.0038864. Epub 2012 Jun 29.

PMID:
22768050
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Predicting nucleic acid binding interfaces from structural models of proteins.

Dror I, Shazman S, Mukherjee S, Zhang Y, Glaser F, Mandel-Gutfreund Y.

Proteins. 2011 Oct 12. doi: 10.1002/prot.23214. [Epub ahead of print]

PMID:
22086767
[PubMed - as supplied by publisher]
Free PMC Article
13.

Cyanophage tRNAs may have a role in cross-infectivity of oceanic Prochlorococcus and Synechococcus hosts.

Enav H, Béjà O, Mandel-Gutfreund Y.

ISME J. 2012 Mar;6(3):619-28. doi: 10.1038/ismej.2011.146. Epub 2011 Oct 20.

PMID:
22011720
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Ancient diversity of splicing motifs and protein surfaces in the wild emmer wheat (Triticum dicoccoides) LR10 coiled coil (CC) and leucine-rich repeat (LRR) domains.

Sela H, Spiridon LN, Petrescu AJ, Akerman M, Mandel-Gutfreund Y, Nevo E, Loutre C, Keller B, Schulman AH, Fahima T.

Mol Plant Pathol. 2012 Apr;13(3):276-87. doi: 10.1111/j.1364-3703.2011.00744.x. Epub 2011 Sep 23.

PMID:
21952112
[PubMed - indexed for MEDLINE]
15.

ARTS, the unusual septin: structural and functional aspects.

Mandel-Gutfreund Y, Kosti I, Larisch S.

Biol Chem. 2011 Aug;392(8-9):783-90. doi: 10.1515/BC.2011.089. Review.

PMID:
21824006
[PubMed - indexed for MEDLINE]
16.

From face to interface recognition: a differential geometric approach to distinguish DNA from RNA binding surfaces.

Shazman S, Elber G, Mandel-Gutfreund Y.

Nucleic Acids Res. 2011 Sep 1;39(17):7390-9. doi: 10.1093/nar/gkr395. Epub 2011 Jun 21.

PMID:
21693557
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Divergent RNA binding specificity of yeast Puf2p.

Yosefzon Y, Koh YY, Chritton JJ, Lande A, Leibovich L, Barziv L, Petzold C, Yakhini Z, Mandel-Gutfreund Y, Wickens M, Arava Y.

RNA. 2011 Aug;17(8):1479-88. doi: 10.1261/rna.2700311. Epub 2011 Jun 17.

PMID:
21685478
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Heterogeneous nuclear ribonucleoprotein H1/H2-dependent unsplicing of thymidine phosphorylase results in anticancer drug resistance.

Stark M, Bram EE, Akerman M, Mandel-Gutfreund Y, Assaraf YG.

J Biol Chem. 2011 Feb 4;286(5):3741-54. doi: 10.1074/jbc.M110.163444. Epub 2010 Nov 10.

PMID:
21068389
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A structural-based statistical approach suggests a cooperative activity of PUM1 and miR-410 in human 3'-untranslated regions.

Leibovich L, Mandel-Gutfreund Y, Yakhini Z.

Silence. 2010 Sep 22;1(1):17. doi: 10.1186/1758-907X-1-17.

PMID:
20860814
[PubMed]
Free PMC Article
20.

SFmap: a web server for motif analysis and prediction of splicing factor binding sites.

Paz I, Akerman M, Dror I, Kosti I, Mandel-Gutfreund Y.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W281-5. doi: 10.1093/nar/gkq444. Epub 2010 May 25.

PMID:
20501600
[PubMed - indexed for MEDLINE]
Free PMC Article

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