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Results: 1 to 20 of 26

1.

Widespread rescue of Y-linked genes by gene movement to autosomes.

Malone JH.

Genome Biol. 2015 Jun 9;16:121. doi: 10.1186/s13059-015-0686-1.

2.

Balancing copy number in ribosomal DNA.

Malone JH.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):2635-6. doi: 10.1073/pnas.1500054112. Epub 2015 Feb 17. No abstract available.

PMID:
25691746
3.

The sex chromosomes of frogs: variability and tolerance offer clues to genome evolution and function.

Malcom JW, Kudra RS, Malone JH.

J Genomics. 2014 Mar 20;2:68-76. doi: 10.7150/jgen.8044. eCollection 2014. Review.

4.

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, Clough E, Dasgupta A, Gubbala S, Han Y, Jayaseelan JC, Kalra D, Kim YA, Kovar CL, Lee SL, Li M, Malley JD, Malone JH, Mathew T, Mattiuzzo NR, Munidasa M, Muzny DM, Ongeri F, Perales L, Przytycka TM, Pu LL, Robinson G, Thornton RL, Saada N, Scherer SE, Smith HE, Vinson C, Warner CB, Worley KC, Wu YQ, Zou X, Cherbas P, Kellis M, Eisen MB, Piano F, Kionte K, Fitch DH, Sternberg PW, Cutter AD, Duff MO, Hoskins RA, Graveley BR, Gibbs RA, Bickel PJ, Kopp A, Carninci P, Celniker SE, Oliver B, Richards S.

Genome Res. 2014 Jul;24(7):1209-23. doi: 10.1101/gr.159384.113.

5.

Diversification and asymmetrical gene flow across time and space: lineage sorting and hybridization in polytypic barking frogs.

Streicher JW, Devitt TJ, Goldberg CS, Malone JH, Blackmon H, Fujita MK.

Mol Ecol. 2014 Jul;23(13):3273-91. doi: 10.1111/mec.12814. Epub 2014 Jun 19.

PMID:
24891255
6.

Sensory drive does not explain reproductive character displacement of male acoustic signals in the upland chorus frog (Pseudacris feriarum).

Malone JH, Ribado J, Lemmon EM.

Evolution. 2014 May;68(5):1306-19. doi: 10.1111/evo.12366. Epub 2014 Mar 4.

PMID:
24475782
7.

Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki).

Sturgill D, Malone JH, Sun X, Smith HE, Rabinow L, Samson ML, Oliver B.

BMC Bioinformatics. 2013 Nov 9;14:320. doi: 10.1186/1471-2105-14-320.

8.

Faster-X evolution of gene expression in Drosophila.

Meisel RP, Malone JH, Clark AG.

PLoS Genet. 2012;8(10):e1003013. doi: 10.1371/journal.pgen.1003013. Epub 2012 Oct 11.

9.

Mediation of Drosophila autosomal dosage effects and compensation by network interactions.

Malone JH, Cho DY, Mattiuzzo NR, Artieri CG, Jiang L, Dale RK, Smith HE, McDaniel J, Munro S, Salit M, Andrews J, Przytycka TM, Oliver B.

Genome Biol. 2012 Apr 24;13(4):r28. doi: 10.1186/gb-2012-13-4-r28.

10.

Disentangling the relationship between sex-biased gene expression and X-linkage.

Meisel RP, Malone JH, Clark AG.

Genome Res. 2012 Jul;22(7):1255-65. doi: 10.1101/gr.132100.111. Epub 2012 Apr 12.

11.

Microarrays, deep sequencing and the true measure of the transcriptome.

Malone JH, Oliver B.

BMC Biol. 2011 May 31;9:34. doi: 10.1186/1741-7007-9-34. Review.

12.

The developmental transcriptome of Drosophila melanogaster.

Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, Lin W, Malone JH, Mattiuzzo NR, Miller D, Sturgill D, Tuch BB, Zaleski C, Zhang D, Blanchette M, Dudoit S, Eads B, Green RE, Hammonds A, Jiang L, Kapranov P, Langton L, Perrimon N, Sandler JE, Wan KH, Willingham A, Zhang Y, Zou Y, Andrews J, Bickel PJ, Brenner SE, Brent MR, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Oliver B, Celniker SE.

Nature. 2011 Mar 24;471(7339):473-9. doi: 10.1038/nature09715. Epub 2010 Dec 22.

13.

Germline-dependent gene expression in distant non-gonadal somatic tissues of Drosophila.

Parisi MJ, Gupta V, Sturgill D, Warren JT, Jallon JM, Malone JH, Zhang Y, Gilbert LI, Oliver B.

BMC Genomics. 2010 Jun 1;11:346. doi: 10.1186/1471-2164-11-346.

14.

Expression in aneuploid Drosophila S2 cells.

Zhang Y, Malone JH, Powell SK, Periwal V, Spana E, Macalpine DM, Oliver B.

PLoS Biol. 2010 Feb 23;8(2):e1000320. doi: 10.1371/journal.pbio.1000320.

15.

Patterns of reproductive isolation in toads.

Malone JH, Fontenot BE.

PLoS One. 2008;3(12):e3900. doi: 10.1371/journal.pone.0003900. Epub 2008 Dec 9.

16.

The sex chromosome that refused to die.

Malone JH, Oliver B.

Bioessays. 2008 May;30(5):409-11. doi: 10.1002/bies.20752. Review.

17.

Gene expression analysis of the ovary of hybrid females of Xenopus laevis and X. muelleri.

Malone JH, Michalak P.

BMC Evol Biol. 2008 Mar 10;8:82. doi: 10.1186/1471-2148-8-82.

18.

Physiological sex predicts hybrid sterility regardless of genotype.

Malone JH, Michalak P.

Science. 2008 Jan 4;319(5859):59. doi: 10.1126/science.1148231.

19.
20.

Sterility and gene expression in hybrid males of Xenopus laevis and X. muelleri.

Malone JH, Chrzanowski TH, Michalak P.

PLoS One. 2007 Aug 22;2(8):e781.

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