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Results: 1 to 20 of 24

1.

The sex chromosomes of frogs: variability and tolerance offer clues to genome evolution and function.

Malcom JW, Kudra RS, Malone JH.

J Genomics. 2014 Mar 20;2:68-76. doi: 10.7150/jgen.8044. eCollection 2014. Review.

PMID:
25031658
[PubMed]
Free PMC Article
2.

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, Clough E, Dasgupta A, Gubbala S, Han Y, Jayaseelan JC, Kalra D, Kim YA, Kovar CL, Lee SL, Li M, Malley JD, Malone JH, Mathew T, Mattiuzzo NR, Munidasa M, Muzny DM, Ongeri F, Perales L, Przytycka TM, Pu LL, Robinson G, Thornton RL, Saada N, Scherer SE, Smith HE, Vinson C, Warner CB, Worley KC, Wu YQ, Zou X, Cherbas P, Kellis M, Eisen MB, Piano F, Kionte K, Fitch DH, Sternberg PW, Cutter AD, Duff MO, Hoskins RA, Graveley BR, Gibbs RA, Bickel PJ, Kopp A, Carninci P, Celniker SE, Oliver B, Richards S.

Genome Res. 2014 Jul;24(7):1209-23. doi: 10.1101/gr.159384.113.

PMID:
24985915
[PubMed - in process]
Free PMC Article
3.

Diversification and asymmetrical gene flow across time and space: lineage sorting and hybridization in polytypic barking frogs.

Streicher JW, Devitt TJ, Goldberg CS, Malone JH, Blackmon H, Fujita MK.

Mol Ecol. 2014 Jul;23(13):3273-3291. doi: 10.1111/mec.12814. Epub 2014 Jun 19.

PMID:
24891255
[PubMed - as supplied by publisher]
4.

Sensory drive does not explain reproductive character displacement of male acoustic signals in the upland chorus frog (Pseudacris feriarum).

Malone JH, Ribado J, Lemmon EM.

Evolution. 2014 May;68(5):1306-19. doi: 10.1111/evo.12366. Epub 2014 Mar 4.

PMID:
24475782
[PubMed - in process]
5.

Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki).

Sturgill D, Malone JH, Sun X, Smith HE, Rabinow L, Samson ML, Oliver B.

BMC Bioinformatics. 2013 Nov 9;14:320. doi: 10.1186/1471-2105-14-320.

PMID:
24209455
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Faster-X evolution of gene expression in Drosophila.

Meisel RP, Malone JH, Clark AG.

PLoS Genet. 2012;8(10):e1003013. doi: 10.1371/journal.pgen.1003013. Epub 2012 Oct 11.

PMID:
23071459
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Mediation of Drosophila autosomal dosage effects and compensation by network interactions.

Malone JH, Cho DY, Mattiuzzo NR, Artieri CG, Jiang L, Dale RK, Smith HE, McDaniel J, Munro S, Salit M, Andrews J, Przytycka TM, Oliver B.

Genome Biol. 2012 Apr 24;13(4):r28. doi: 10.1186/gb-2012-13-4-r28.

PMID:
22531030
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Disentangling the relationship between sex-biased gene expression and X-linkage.

Meisel RP, Malone JH, Clark AG.

Genome Res. 2012 Jul;22(7):1255-65. doi: 10.1101/gr.132100.111. Epub 2012 Apr 12.

PMID:
22499666
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Microarrays, deep sequencing and the true measure of the transcriptome.

Malone JH, Oliver B.

BMC Biol. 2011 May 31;9:34. doi: 10.1186/1741-7007-9-34. Review.

PMID:
21627854
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The developmental transcriptome of Drosophila melanogaster.

Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, Lin W, Malone JH, Mattiuzzo NR, Miller D, Sturgill D, Tuch BB, Zaleski C, Zhang D, Blanchette M, Dudoit S, Eads B, Green RE, Hammonds A, Jiang L, Kapranov P, Langton L, Perrimon N, Sandler JE, Wan KH, Willingham A, Zhang Y, Zou Y, Andrews J, Bickel PJ, Brenner SE, Brent MR, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Oliver B, Celniker SE.

Nature. 2011 Mar 24;471(7339):473-9. doi: 10.1038/nature09715. Epub 2010 Dec 22.

PMID:
21179090
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Germline-dependent gene expression in distant non-gonadal somatic tissues of Drosophila.

Parisi MJ, Gupta V, Sturgill D, Warren JT, Jallon JM, Malone JH, Zhang Y, Gilbert LI, Oliver B.

BMC Genomics. 2010 Jun 1;11:346. doi: 10.1186/1471-2164-11-346.

PMID:
20515475
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Expression in aneuploid Drosophila S2 cells.

Zhang Y, Malone JH, Powell SK, Periwal V, Spana E, Macalpine DM, Oliver B.

PLoS Biol. 2010 Feb 23;8(2):e1000320. doi: 10.1371/journal.pbio.1000320.

PMID:
20186269
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Patterns of reproductive isolation in toads.

Malone JH, Fontenot BE.

PLoS One. 2008;3(12):e3900. doi: 10.1371/journal.pone.0003900. Epub 2008 Dec 9.

PMID:
19065271
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The sex chromosome that refused to die.

Malone JH, Oliver B.

Bioessays. 2008 May;30(5):409-11. doi: 10.1002/bies.20752. Review.

PMID:
18404685
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Gene expression analysis of the ovary of hybrid females of Xenopus laevis and X. muelleri.

Malone JH, Michalak P.

BMC Evol Biol. 2008 Mar 10;8:82. doi: 10.1186/1471-2148-8-82.

PMID:
18331635
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Physiological sex predicts hybrid sterility regardless of genotype.

Malone JH, Michalak P.

Science. 2008 Jan 4;319(5859):59. doi: 10.1126/science.1148231.

PMID:
18174434
[PubMed - indexed for MEDLINE]
Free Article
17.

Testis-derived microRNA profiles of African clawed frogs (Xenopus) and their sterile hybrids.

Michalak P, Malone JH.

Genomics. 2008 Feb;91(2):158-64.

PMID:
18079091
[PubMed - indexed for MEDLINE]
Free Article
18.

Sterility and gene expression in hybrid males of Xenopus laevis and X. muelleri.

Malone JH, Chrzanowski TH, Michalak P.

PLoS One. 2007 Aug 22;2(8):e781.

PMID:
17712429
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Gene expression polymorphism in Drosophila populations.

Michalak P, Malone JH, Lee IT, Hoshino D, Ma D.

Mol Ecol. 2007 Mar;16(6):1179-89.

PMID:
17391405
[PubMed - indexed for MEDLINE]
20.

Factors associated with the catastrophic decline of a cloudforest frog fauna in Guatemala.

Mendelson JR 3rd, Brodie ED Jr, Malone JH, Acevedo ME, Baker MA, Smatresk NJ, Campbell JA.

Rev Biol Trop. 2004 Dec;52(4):991-1000.

PMID:
17354411
[PubMed - indexed for MEDLINE]

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