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Epigenetic changes mediated by polycomb repressive complex 2 and E2a are associated with drug resistance in a mouse model of lymphoma.

Flinders C, Lam L, Rubbi L, Ferrari R, Fitz-Gibbon S, Chen PY, Thompson M, Christofk H, B Agus D, Ruderman D, Mallick P, Pellegrini M.

Genome Med. 2016 May 4;8(1):54. doi: 10.1186/s13073-016-0305-0.


Genetic trend for growth and wool performance in a closed flock of Bharat Merino sheep at sub temperate region of Kodai hills, Tamil Nadu.

Mallick PK, Thirumaran SM, Pourouchottamane R, Rajapandi S, Venkataramanan R, Nagarajan G, Murali G, Rajendiran AS.

Vet World. 2016 Mar;9(3):276-80. doi: 10.14202/vetworld.2016.276-280. Epub 2016 Mar 16.


A Method for Amplicon Deep Sequencing of Drug Resistance Genes in Plasmodium falciparum Clinical Isolates from India.

Rao PN, Uplekar S, Kayal S, Mallick PK, Bandyopadhyay N, Kale S, Singh OP, Mohanty A, Mohanty S, Wassmer SC, Carlton JM.

J Clin Microbiol. 2016 Jun;54(6):1500-11. doi: 10.1128/JCM.00235-16. Epub 2016 Mar 23.


Protein biomarkers on tissue as imaged via MALDI mass spectrometry: A systematic approach to study the limits of detection.

van de Ven S, Bemis KD, Lau K, Adusumilli R, Kota U, Stolowitz M, Vitek O, Mallick P, Gambhir SS.

Proteomics. 2016 Mar 11. doi: 10.1002/pmic.201500515. [Epub ahead of print]


In Vitro Approaches to Study Regulation of Hepatic Cytochrome P450 (CYP) 3A Expression by Paclitaxel and Rifampicin.

Ghose R, Mallick P, Taneja G, Chu C, Moorthy B.

Methods Mol Biol. 2016;1395:55-68. doi: 10.1007/978-1-4939-3347-1_4.


Probabilistic Segmentation of Mass Spectrometry (MS) Images Helps Select Important Ions and Characterize Confidence in the Resulting Segments.

Bemis KD, Harry A, Eberlin LS, Ferreira CR, van de Ven SM, Mallick P, Stolowitz M, Vitek O.

Mol Cell Proteomics. 2016 May;15(5):1761-72. doi: 10.1074/mcp.O115.053918. Epub 2016 Jan 21.


Simulation of the Protein-Shedding Kinetics of a Fully Vascularized Tumor.

Frieboes HB, Curtis LT, Wu M, Kani K, Mallick P.

Cancer Inform. 2015 Dec 20;14:163-75. doi: 10.4137/CIN.S35374. eCollection 2015.


Nanostructured Anodic Multilayer Dielectric Stacked Metal-Insulator-Metal Capacitors.

Karthik R, Kannadassan D, Baghini MS, Mallick PS.

J Nanosci Nanotechnol. 2015 Dec;15(12):9938-43.


AshwaMAX and Withaferin A inhibits gliomas in cellular and murine orthotopic models.

Chang E, Pohling C, Natarajan A, Witney TH, Kaur J, Xu L, Gowrishankar G, D'Souza AL, Murty S, Schick S, Chen L, Wu N, Khaw P, Mischel P, Abbasi T, Usmani S, Mallick P, Gambhir SS.

J Neurooncol. 2016 Jan;126(2):253-64. doi: 10.1007/s11060-015-1972-1. Epub 2015 Dec 9.


A rare case of unusual migrated foreign bodies in kidney and their successful extraction using retrograde percutaneous nephrostomy.

Upadhyay SP, Zahir M, Al Muttari H, Mallick PN.

Qatar Med J. 2015 Jul 2;2015(1):7. doi: 10.5339/qmj.2015.7. eCollection 2015.


Polymorphism in drug resistance genes dihydrofolate reductase and dihydropteroate synthase in Plasmodium falciparum in some states of India.

Sharma D, Lather M, Mallick PK, Adak T, Dang AS, Valecha N, Singh OP.

Parasit Vectors. 2015 Sep 17;8:471. doi: 10.1186/s13071-015-1080-2.


Impact of obesity on accumulation of the toxic irinotecan metabolite, SN-38, in mice.

Mallick P, Shah P, Gandhi A, Ghose R.

Life Sci. 2015 Oct 15;139:132-8. doi: 10.1016/j.lfs.2015.08.017. Epub 2015 Sep 1.


The Impact of Microenvironmental Heterogeneity on the Evolution of Drug Resistance in Cancer Cells.

Mumenthaler SM, Foo J, Choi NC, Heise N, Leder K, Agus DB, Pao W, Michor F, Mallick P.

Cancer Inform. 2015 Jul 15;14(Suppl 4):19-31. doi: 10.4137/CIN.S19338. eCollection 2015.


Predictive Modeling of Drug Response in Non-Hodgkin's Lymphoma.

Frieboes HB, Smith BR, Wang Z, Kotsuma M, Ito K, Day A, Cahill B, Flinders C, Mumenthaler SM, Mallick P, Simbawa E, Al-Fhaid AS, Mahmoud SR, Gambhir SS, Cristini V.

PLoS One. 2015 Jun 10;10(6):e0129433. doi: 10.1371/journal.pone.0129433. eCollection 2015.


A fully human scFv phage display library for rapid antibody fragment reformatting.

Li K, Zettlitz KA, Lipianskaya J, Zhou Y, Marks JD, Mallick P, Reiter RE, Wu AM.

Protein Eng Des Sel. 2015 Oct;28(10):307-16. doi: 10.1093/protein/gzv024. Epub 2015 May 19.


Impact of Oxidative Stress Biomarkers and Carboxymethyllysine (an Advanced Glycation End Product) on Prostate Cancer: A Prospective Study.

Yang S, Pinney SM, Mallick P, Ho SM, Bracken B, Wu T.

Clin Genitourin Cancer. 2015 Oct;13(5):e347-51. doi: 10.1016/j.clgc.2015.04.004. Epub 2015 Apr 18.


Neuronal Activity Promotes Glioma Growth through Neuroligin-3 Secretion.

Venkatesh HS, Johung TB, Caretti V, Noll A, Tang Y, Nagaraja S, Gibson EM, Mount CW, Polepalli J, Mitra SS, Woo PJ, Malenka RC, Vogel H, Bredel M, Mallick P, Monje M.

Cell. 2015 May 7;161(4):803-16. doi: 10.1016/j.cell.2015.04.012. Epub 2015 Apr 23.


Status of DDT and pyrethroid resistance in Indian Aedes albopictus and absence of knockdown resistance (kdr) mutation.

Kushwah RB, Mallick PK, Ravikumar H, Dev V, Kapoor N, Adak TP, Singh OP.

J Vector Borne Dis. 2015 Mar;52(1):95-8.


Cardinal: an R package for statistical analysis of mass spectrometry-based imaging experiments.

Bemis KD, Harry A, Eberlin LS, Ferreira C, van de Ven SM, Mallick P, Stolowitz M, Vitek O.

Bioinformatics. 2015 Jul 15;31(14):2418-20. doi: 10.1093/bioinformatics/btv146. Epub 2015 Mar 15.


Building high-quality assay libraries for targeted analysis of SWATH MS data.

Schubert OT, Gillet LC, Collins BC, Navarro P, Rosenberger G, Wolski WE, Lam H, Amodei D, Mallick P, MacLean B, Aebersold R.

Nat Protoc. 2015 Mar;10(3):426-41. doi: 10.1038/nprot.2015.015. Epub 2015 Feb 12.

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