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Results: 1 to 20 of 54

1.

Development and assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the Illumina MiSeq.

McElhoe JA, Holland MM, Makova KD, Su MS, Paul IM, Baker CH, Faith SA, Young B.

Forensic Sci Int Genet. 2014 May 20;13C:20-29. doi: 10.1016/j.fsigen.2014.05.007. [Epub ahead of print]

PMID:
25051226
[PubMed - as supplied by publisher]
2.

The Intervention Nurses Start Infants Growing on Healthy Trajectories (INSIGHT) study.

Paul IM, Williams JS, Anzman-Frasca S, Beiler JS, Makova KD, Marini ME, Hess LB, Rzucidlo SE, Verdiglione N, Mindell JA, Birch LL.

BMC Pediatr. 2014 Jul 18;14:184. doi: 10.1186/1471-2431-14-184.

PMID:
25037579
[PubMed - in process]
Free PMC Article
3.

Microsatellite interruptions stabilize primate genomes and exist as population-specific single nucleotide polymorphisms within individual human genomes.

Ananda G, Hile SE, Breski A, Wang Y, Kelkar Y, Makova KD, Eckert KA.

PLoS Genet. 2014 Jul 17;10(7):e1004498. doi: 10.1371/journal.pgen.1004498. eCollection 2014 Jul.

PMID:
25033203
[PubMed - in process]
Free PMC Article
4.

Genomic landscape of human, bat, and ex vivo DNA transposon integrations.

Campos-Sánchez R, Kapusta A, Feschotte C, Chiaromonte F, Makova KD.

Mol Biol Evol. 2014 Jul;31(7):1816-32. doi: 10.1093/molbev/msu138. Epub 2014 Apr 22.

PMID:
24809961
[PubMed - in process]
5.

Controlling for contamination in re-sequencing studies with a reproducible web-based phylogenetic approach.

Dickins B, Rebolledo-Jaramillo B, Su MS, Paul IM, Blankenberg D, Stoler N, Makova KD, Nekrutenko A.

Biotechniques. 2014 Mar 1;56(3):134-6, 138-41. doi: 10.2144/000114146. eCollection 2014.

PMID:
24641477
[PubMed - in process]
Free Article
6.

Segmenting the human genome based on states of neutral genetic divergence.

Kuruppumullage Don P, Ananda G, Chiaromonte F, Makova KD.

Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14699-704. doi: 10.1073/pnas.1221792110. Epub 2013 Aug 19.

PMID:
23959903
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes.

Montgomery SB, Goode DL, Kvikstad E, Albers CA, Zhang ZD, Mu XJ, Ananda G, Howie B, Karczewski KJ, Smith KS, Anaya V, Richardson R, Davis J; 1000 Genomes Project Consortium, MacArthur DG, Sidow A, Duret L, Gerstein M, Makova KD, Marchini J, McVean G, Lunter G.

Genome Res. 2013 May;23(5):749-61. doi: 10.1101/gr.148718.112. Epub 2013 Mar 11.

PMID:
23478400
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Mature microsatellites: mechanisms underlying dinucleotide microsatellite mutational biases in human cells.

Baptiste BA, Ananda G, Strubczewski N, Lutzkanin A, Khoo SJ, Srikanth A, Kim N, Makova KD, Krasilnikova MM, Eckert KA.

G3 (Bethesda). 2013 Mar;3(3):451-63. doi: 10.1534/g3.112.005173. Epub 2013 Mar 1.

PMID:
23450065
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Distinct mutational behaviors differentiate short tandem repeats from microsatellites in the human genome.

Ananda G, Walsh E, Jacob KD, Krasilnikova M, Eckert KA, Chiaromonte F, Makova KD.

Genome Biol Evol. 2013;5(3):606-20. doi: 10.1093/gbe/evs116.

PMID:
23241442
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Gene survival and death on the human Y chromosome.

Wilson Sayres MA, Makova KD.

Mol Biol Evol. 2013 Apr;30(4):781-7. doi: 10.1093/molbev/mss267. Epub 2012 Dec 4.

PMID:
23223713
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Rescuing Alu: recovery of new inserts shows LINE-1 preserves Alu activity through A-tail expansion.

Wagstaff BJ, Hedges DJ, Derbes RS, Campos Sanchez R, Chiaromonte F, Makova KD, Roy-Engel AM.

PLoS Genet. 2012;8(8):e1002842. doi: 10.1371/journal.pgen.1002842. Epub 2012 Aug 9.

PMID:
22912586
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A genome-wide analysis of common fragile sites: what features determine chromosomal instability in the human genome?

Fungtammasan A, Walsh E, Chiaromonte F, Eckert KA, Makova KD.

Genome Res. 2012 Jun;22(6):993-1005. doi: 10.1101/gr.134395.111. Epub 2012 Mar 28.

PMID:
22456607
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Harnessing cloud computing with Galaxy Cloud.

Afgan E, Baker D, Coraor N, Goto H, Paul IM, Makova KD, Nekrutenko A, Taylor J.

Nat Biotechnol. 2011 Nov 8;29(11):972-4. doi: 10.1038/nbt.2028. No abstract available.

PMID:
22068528
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome analyses substantiate male mutation bias in many species.

Wilson Sayres MA, Makova KD.

Bioessays. 2011 Dec;33(12):938-45. doi: 10.1002/bies.201100091. Epub 2011 Oct 18. Review.

PMID:
22006834
[PubMed - indexed for MEDLINE]
15.

A matter of life or death: how microsatellites emerge in and vanish from the human genome.

Kelkar YD, Eckert KA, Chiaromonte F, Makova KD.

Genome Res. 2011 Dec;21(12):2038-48. doi: 10.1101/gr.122937.111. Epub 2011 Oct 12.

PMID:
21994250
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Do variations in substitution rates and male mutation bias correlate with life-history traits? A study of 32 mammalian genomes.

Wilson Sayres MA, Venditti C, Pagel M, Makova KD.

Evolution. 2011 Oct;65(10):2800-15. doi: 10.1111/j.1558-5646.2011.01337.x. Epub 2011 Jun 20.

PMID:
21967423
[PubMed - indexed for MEDLINE]
17.

A massively parallel sequencing approach uncovers ancient origins and high genetic variability of endangered Przewalski's horses.

Goto H, Ryder OA, Fisher AR, Schultz B, Kosakovsky Pond SL, Nekrutenko A, Makova KD.

Genome Biol Evol. 2011;3:1096-106. doi: 10.1093/gbe/evr067. Epub 2011 Jul 29.

PMID:
21803766
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Dynamics of mitochondrial heteroplasmy in three families investigated via a repeatable re-sequencing study.

Goto H, Dickins B, Afgan E, Paul IM, Taylor J, Makova KD, Nekrutenko A.

Genome Biol. 2011;12(6):R59. doi: 10.1186/gb-2011-12-6-r59. Epub 2011 Jun 23.

PMID:
21699709
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A computational approach to candidate gene prioritization for X-linked mental retardation using annotation-based binary filtering and motif-based linear discriminatory analysis.

Lombard Z, Park C, Makova KD, Ramsay M.

Biol Direct. 2011 Jun 13;6:30. doi: 10.1186/1745-6150-6-30.

PMID:
21668950
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A genome-wide view of mutation rate co-variation using multivariate analyses.

Ananda G, Chiaromonte F, Makova KD.

Genome Biol. 2011;12(3):R27. doi: 10.1186/gb-2011-12-3-r27. Epub 2011 Mar 22.

PMID:
21426544
[PubMed - indexed for MEDLINE]
Free PMC Article

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