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Results: 1 to 20 of 47

1.

Unraveling recombination rate evolution using ancestral recombination maps.

Munch K, Schierup MH, Mailund T.

Bioessays. 2014 Jul 14. doi: 10.1002/bies.201400047. [Epub ahead of print]

PMID:
25043668
[PubMed - as supplied by publisher]
2.

tqDist: a library for computing the quartet and triplet distances between binary or general trees.

Sand A, Holt MK, Johansen J, Brodal GS, Mailund T, Pedersen CN.

Bioinformatics. 2014 Jul 15;30(14):2079-80. doi: 10.1093/bioinformatics/btu157. Epub 2014 Mar 20.

PMID:
24651968
[PubMed - in process]
3.

Identifying disease associated genes by network propagation.

Qian Y, Besenbacher S, Mailund T, Schierup MH.

BMC Syst Biol. 2014;8 Suppl 1:S6. doi: 10.1186/1752-0509-8-S1-S6. Epub 2014 Jan 24.

PMID:
24565229
[PubMed - in process]
Free PMC Article
4.

zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm.

Sand A, Kristiansen M, Pedersen CN, Mailund T.

BMC Bioinformatics. 2013 Nov 22;14:339. doi: 10.1186/1471-2105-14-339.

PMID:
24266924
[PubMed - indexed for MEDLINE]
Free Article
5.

A fine-scale recombination map of the human-chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion.

Munch K, Mailund T, Dutheil JY, Schierup MH.

Genome Res. 2014 Mar;24(3):467-74. doi: 10.1101/gr.158469.113. Epub 2013 Nov 4.

PMID:
24190946
[PubMed - in process]
6.

Great ape genetic diversity and population history.

Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T.

Nature. 2013 Jul 25;499(7459):471-5. doi: 10.1038/nature12228. Epub 2013 Jul 3.

PMID:
23823723
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Efficient computation in the IM model.

Andersen LN, Mailund T, Hobolth A.

J Math Biol. 2014 May;68(6):1423-51. doi: 10.1007/s00285-013-0671-9. Epub 2013 Apr 16.

PMID:
23588350
[PubMed - in process]
8.

A practical O(n log2 n) time algorithm for computing the triplet distance on binary trees.

Sand A, Brodal GS, Fagerberg R, Pedersen CN, Mailund T.

BMC Bioinformatics. 2013;14 Suppl 2:S18. doi: 10.1186/1471-2105-14-S2-S18. Epub 2013 Jan 21.

PMID:
23368759
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species.

Mailund T, Halager AE, Westergaard M, Dutheil JY, Munch K, Andersen LN, Lunter G, Prüfer K, Scally A, Hobolth A, Schierup MH.

PLoS Genet. 2012;8(12):e1003125. doi: 10.1371/journal.pgen.1003125. Epub 2012 Dec 20.

PMID:
23284294
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Algorithms for hidden markov models restricted to occurrences of regular expressions.

Tataru P, Sand A, Hobolth A, Mailund T, Pedersen CN.

Biology (Basel). 2013 Nov 8;2(4):1282-95. doi: 10.3390/biology2041282.

PMID:
24833225
[PubMed]
Free PMC Article
11.

Algorithms for computing the triplet and quartet distances for binary and general trees.

Sand A, Holt MK, Johansen J, Fagerberg R, Brodal GS, Pedersen CN, Mailund T.

Biology (Basel). 2013 Sep 26;2(4):1189-209. doi: 10.3390/biology2041189.

PMID:
24833220
[PubMed]
Free PMC Article
12.

An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes.

Jin X, He M, Ferguson B, Meng Y, Ouyang L, Ren J, Mailund T, Sun F, Sun L, Shen J, Zhuo M, Song L, Wang J, Ling F, Zhu Y, Hvilsom C, Siegismund H, Liu X, Gong Z, Ji F, Wang X, Liu B, Zhang Y, Hou J, Wang J, Zhao H, Wang Y, Fang X, Zhang G, Wang J, Zhang X, Schierup MH, Du H, Wang J, Wang X.

PLoS One. 2012;7(7):e40637. doi: 10.1371/journal.pone.0040637. Epub 2012 Jul 27.

PMID:
22848389
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.

Miller W, Schuster SC, Welch AJ, Ratan A, Bedoya-Reina OC, Zhao F, Kim HL, Burhans RC, Drautz DI, Wittekindt NE, Tomsho LP, Ibarra-Laclette E, Herrera-Estrella L, Peacock E, Farley S, Sage GK, Rode K, Obbard M, Montiel R, Bachmann L, Ingólfsson O, Aars J, Mailund T, Wiig O, Talbot SL, Lindqvist C.

Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):E2382-90. doi: 10.1073/pnas.1210506109. Epub 2012 Jul 23.

PMID:
22826254
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The bonobo genome compared with the chimpanzee and human genomes.

Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, Higashino S, Hobolth A, Dutheil J, Karakoç E, Alkan C, Sajjadian S, Catacchio CR, Ventura M, Marques-Bonet T, Eichler EE, André C, Atencia R, Mugisha L, Junhold J, Patterson N, Siebauer M, Good JM, Fischer A, Ptak SE, Lachmann M, Symer DE, Mailund T, Schierup MH, Andrés AM, Kelso J, Pääbo S.

Nature. 2012 Jun 28;486(7404):527-31. doi: 10.1038/nature11128.

PMID:
22722832
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Cultural phylogenetics of the Tupi language family in lowland South America.

Walker RS, Wichmann S, Mailund T, Atkisson CJ.

PLoS One. 2012;7(4):e35025. doi: 10.1371/journal.pone.0035025. Epub 2012 Apr 10.

PMID:
22506065
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Association mapping and disease: evolutionary perspectives.

Besenbacher S, Mailund T, Schierup MH.

Methods Mol Biol. 2012;856:275-91. doi: 10.1007/978-1-61779-585-5_11. Review.

PMID:
22399463
[PubMed - indexed for MEDLINE]
17.

Insights into hominid evolution from the gorilla genome sequence.

Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T, McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, Xue Y, Yngvadottir B, Alkan C, Andersen LN, Ayub Q, Ball EV, Beal K, Bradley BJ, Chen Y, Clee CM, Fitzgerald S, Graves TA, Gu Y, Heath P, Heger A, Karakoc E, Kolb-Kokocinski A, Laird GK, Lunter G, Meader S, Mort M, Mullikin JC, Munch K, O'Connor TD, Phillips AD, Prado-Martinez J, Rogers AS, Sajjadian S, Schmidt D, Shaw K, Simpson JT, Stenson PD, Turner DJ, Vigilant L, Vilella AJ, Whitener W, Zhu B, Cooper DN, de Jong P, Dermitzakis ET, Eichler EE, Flicek P, Goldman N, Mundy NI, Ning Z, Odom DT, Ponting CP, Quail MA, Ryder OA, Searle SM, Warren WC, Wilson RK, Schierup MH, Rogers J, Tyler-Smith C, Durbin R.

Nature. 2012 Mar 7;483(7388):169-75. doi: 10.1038/nature10842.

PMID:
22398555
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Extensive X-linked adaptive evolution in central chimpanzees.

Hvilsom C, Qian Y, Bataillon T, Li Y, Mailund T, Sallé B, Carlsen F, Li R, Zheng H, Jiang T, Jiang H, Jin X, Munch K, Hobolth A, Siegismund HR, Wang J, Schierup MH.

Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):2054-9. doi: 10.1073/pnas.1106877109. Epub 2012 Jan 23.

PMID:
22308321
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Local genealogies in a linear mixed model for genome-wide association mapping in complex pedigreed populations.

Sahana G, Mailund T, Lund MS, Guldbrandtsen B.

PLoS One. 2011;6(11):e27061. doi: 10.1371/journal.pone.0027061. Epub 2011 Nov 2.

PMID:
22073255
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A sub-cubic time algorithm for computing the quartet distance between two general trees.

Nielsen J, Kristensen AK, Mailund T, Pedersen CN.

Algorithms Mol Biol. 2011 Jun 3;6:15. doi: 10.1186/1748-7188-6-15.

PMID:
21639882
[PubMed]
Free PMC Article

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