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Results: 1 to 20 of 50

1.

Pilot study to assess toxicity and pharmacokinetics of docetaxel in patients with metastatic breast cancer and impaired liver function secondary to hepatic metastases.

Eckmann K, Michaud LB, Rivera E, Madden TL, Esparza-Guerra L, Kawedia J, Booser DJ, Green MC, Hortobagyi GN, Valero V.

J Oncol Pharm Pract. 2014 Apr;20(2):120-9. doi: 10.1177/1078155213480536. Epub 2013 May 14.

PMID:
23676510
[PubMed - in process]
2.

IgBLAST: an immunoglobulin variable domain sequence analysis tool.

Ye J, Ma N, Madden TL, Ostell JM.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W34-40. doi: 10.1093/nar/gkt382. Epub 2013 May 13.

PMID:
23671333
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

BLAST: a more efficient report with usability improvements.

Boratyn GM, Camacho C, Cooper PS, Coulouris G, Fong A, Ma N, Madden TL, Matten WT, McGinnis SD, Merezhuk Y, Raytselis Y, Sayers EW, Tao T, Ye J, Zaretskaya I.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W29-33. doi: 10.1093/nar/gkt282. Epub 2013 Apr 22.

PMID:
23609542
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Targeting the insulin-like growth factor-1 receptor to overcome bortezomib resistance in preclinical models of multiple myeloma.

Kuhn DJ, Berkova Z, Jones RJ, Woessner R, Bjorklund CC, Ma W, Davis RE, Lin P, Wang H, Madden TL, Wei C, Baladandayuthapani V, Wang M, Thomas SK, Shah JJ, Weber DM, Orlowski RZ.

Blood. 2012 Oct 18;120(16):3260-70. doi: 10.1182/blood-2011-10-386789. Epub 2012 Aug 29.

PMID:
22932796
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.

Ye J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden TL.

BMC Bioinformatics. 2012 Jun 18;13:134. doi: 10.1186/1471-2105-13-134.

PMID:
22708584
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

New finite-size correction for local alignment score distributions.

Park Y, Sheetlin S, Ma N, Madden TL, Spouge JL.

BMC Res Notes. 2012 Jun 12;5:286. doi: 10.1186/1756-0500-5-286.

PMID:
22691307
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Domain enhanced lookup time accelerated BLAST.

Boratyn GM, Schäffer AA, Agarwala R, Altschul SF, Lipman DJ, Madden TL.

Biol Direct. 2012 Apr 17;7:12. doi: 10.1186/1745-6150-7-12.

PMID:
22510480
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Phase I study of the combination of sorafenib and temsirolimus in patients with metastatic melanoma.

Davies MA, Fox PS, Papadopoulos NE, Bedikian AY, Hwu WJ, Lazar AJ, Prieto VG, Culotta KS, Madden TL, Xu Q, Huang S, Deng W, Ng CS, Gupta S, Liu W, Dancey JE, Wright JJ, Bassett RL, Hwu P, Kim KB.

Clin Cancer Res. 2012 Feb 15;18(4):1120-8. doi: 10.1158/1078-0432.CCR-11-2436. Epub 2012 Jan 5.

PMID:
22223528
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Database resources of the National Center for Biotechnology Information.

Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Federhen S, Feolo M, Fingerman IM, Geer LY, Helmberg W, Kapustin Y, Krasnov S, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Karsch-Mizrachi I, Ostell J, Panchenko A, Phan L, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, Wilbur WJ, Yaschenko E, Ye J.

Nucleic Acids Res. 2012 Jan;40(Database issue):D13-25. doi: 10.1093/nar/gkr1184. Epub 2011 Dec 2.

PMID:
22140104
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Phase I trial of hepatic arterial infusion of nanoparticle albumin-bound paclitaxel: toxicity, pharmacokinetics, and activity.

Fu S, Naing A, Moulder SL, Culotta KS, Madoff DC, Ng CS, Madden TL, Falchook GS, Hong DS, Kurzrock R.

Mol Cancer Ther. 2011 Jul;10(7):1300-7. doi: 10.1158/1535-7163.MCT-11-0259. Epub 2011 May 13.

PMID:
21571911
[PubMed - indexed for MEDLINE]
Free Article
11.

Database resources of the National Center for Biotechnology Information.

Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Federhen S, Feolo M, Fingerman IM, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Mizrachi I, Ostell J, Panchenko A, Phan L, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, Wilbur WJ, Yaschenko E, Ye J.

Nucleic Acids Res. 2011 Jan;39(Database issue):D38-51. doi: 10.1093/nar/gkq1172. Epub 2010 Nov 21.

PMID:
21097890
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A phase I study of vorinostat in combination with idarubicin in relapsed or refractory leukaemia.

Kadia TM, Yang H, Ferrajoli A, Maddipotti S, Schroeder C, Madden TL, Holleran JL, Egorin MJ, Ravandi F, Thomas DA, Newsome W, Sanchez-Gonzalez B, Zwiebel JA, Espinoza-Delgado I, Kantarjian HM, Garcia-Manero G.

Br J Haematol. 2010 Jul;150(1):72-82. doi: 10.1111/j.1365-2141.2010.08211.x. Epub 2010 Apr 29.

PMID:
20456355
[PubMed - indexed for MEDLINE]
13.

BLAST+: architecture and applications.

Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL.

BMC Bioinformatics. 2009 Dec 15;10:421. doi: 10.1186/1471-2105-10-421.

PMID:
20003500
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Database resources of the National Center for Biotechnology Information.

Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Mizrachi I, Ostell J, Panchenko A, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, John Wilbur W, Yaschenko E, Ye J.

Nucleic Acids Res. 2010 Jan;38(Database issue):D5-16. doi: 10.1093/nar/gkp967. Epub 2009 Nov 12.

PMID:
19910364
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Phase I/II study of G3139 (Bcl-2 antisense oligonucleotide) in combination with doxorubicin and docetaxel in breast cancer.

Moulder SL, Symmans WF, Booser DJ, Madden TL, Lipsanen C, Yuan L, Brewster AM, Cristofanilli M, Hunt KK, Buchholz TA, Zwiebel J, Valero V, Hortobagyi GN, Esteva FJ.

Clin Cancer Res. 2008 Dec 1;14(23):7909-16. doi: 10.1158/1078-0432.CCR-08-1104.

PMID:
19047121
[PubMed - indexed for MEDLINE]
Free Article
16.

Database resources of the National Center for Biotechnology Information.

Sayers EW, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Madden TL, Maglott DR, Miller V, Mizrachi I, Ostell J, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Yaschenko E, Ye J.

Nucleic Acids Res. 2009 Jan;37(Database issue):D5-15. doi: 10.1093/nar/gkn741. Epub 2008 Oct 21. Erratum in: Nucleic Acids Res. 2009 May;37(9):3124.

PMID:
18940862
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Database indexing for production MegaBLAST searches.

Morgulis A, Coulouris G, Raytselis Y, Madden TL, Agarwala R, Schäffer AA.

Bioinformatics. 2008 Aug 15;24(16):1757-64. doi: 10.1093/bioinformatics/btn322. Epub 2008 Jun 21. Erratum in: Bioinformatics. 2008 Dec 15;24(24):2942.

PMID:
18567917
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

NCBI BLAST: a better web interface.

Johnson M, Zaretskaya I, Raytselis Y, Merezhuk Y, McGinnis S, Madden TL.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W5-9. doi: 10.1093/nar/gkn201. Epub 2008 Apr 24.

PMID:
18440982
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Sequence similarity searching using the BLAST family of programs.

Wolfsberg TG, Madden TL.

Curr Protoc Protein Sci. 2001 May;Chapter 2:Unit2.5. doi: 10.1002/0471140864.ps0205s15.

PMID:
18429153
[PubMed - indexed for MEDLINE]
20.

Sequence similarity searching using the BLAST family of programs.

Wolfsberg TG, Madden TL.

Curr Protoc Mol Biol. 2001 May;Chapter 19:Unit 19.3. doi: 10.1002/0471142727.mb1903s46.

PMID:
18265177
[PubMed - indexed for MEDLINE]

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