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Items: 1 to 20 of 154

1.

Comparative Genomics between Two Xenorhabdus bovienii Strains Highlights Differential Evolutionary Scenarios within an Entomopathogenic Bacterial Species.

Bisch G, Ogier JC, Médigue C, Rouy Z, Vincent S, Tailliez P, Givaudan A, Gaudriault S.

Genome Biol Evol. 2016 Jan 14;8(1):148-60. doi: 10.1093/gbe/evv248.

2.

RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori.

Redko Y, Galtier E, Arnion H, Darfeuille F, Sismeiro O, Coppée JY, Médigue C, Weiman M, Cruveiller S, De Reuse H.

RNA Biol. 2016 Jan 4:0. [Epub ahead of print]

PMID:
26726773
3.

A new network representation of the metabolism to detect chemical transformation modules.

Sorokina M, Medigue C, Vallenet D.

BMC Bioinformatics. 2015 Nov 14;16(1):385. doi: 10.1186/s12859-015-0809-4.

4.

Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment.

Maddamsetti R, Hatcher PJ, Cruveiller S, Médigue C, Barrick JE, Lenski RE.

Mol Biol Evol. 2015 Nov;32(11):2897-904. doi: 10.1093/molbev/msv161. Epub 2015 Jul 20.

5.

Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant.

Persson T, Battenberg K, Demina IV, Vigil-Stenman T, Vanden Heuvel B, Pujic P, Facciotti MT, Wilbanks EG, O'Brien A, Fournier P, Cruz Hernandez MA, Mendoza Herrera A, Médigue C, Normand P, Pawlowski K, Berry AM.

PLoS One. 2015 May 28;10(5):e0127630. doi: 10.1371/journal.pone.0127630. eCollection 2015.

6.

16S rRNA and As-Related Functional Diversity: Contrasting Fingerprints in Arsenic-Rich Sediments from an Acid Mine Drainage.

Fahy A, Giloteaux L, Bertin P, Le Paslier D, Médigue C, Weissenbach J, Duran R, Lauga B.

Microb Ecol. 2015 Jul;70(1):154-67. doi: 10.1007/s00248-014-0558-3. Epub 2015 Jan 16.

PMID:
25592635
7.

Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease.

Gomez-Valero L, Rusniok C, Rolando M, Neou M, Dervins-Ravault D, Demirtas J, Rouy Z, Moore RJ, Chen H, Petty NK, Jarraud S, Etienne J, Steinert M, Heuner K, Gribaldo S, Médigue C, Glöckner G, Hartland EL, Buchrieser C.

Genome Biol. 2014;15(11):505.

8.

Genome features of the endophytic actinobacterium Micromonospora lupini strain Lupac 08: on the process of adaptation to an endophytic life style?

Trujillo ME, Bacigalupe R, Pujic P, Igarashi Y, Benito P, Riesco R, Médigue C, Normand P.

PLoS One. 2014 Sep 30;9(9):e108522. doi: 10.1371/journal.pone.0108522. eCollection 2014.

9.

Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli.

Raeside C, Gaffé J, Deatherage DE, Tenaillon O, Briska AM, Ptashkin RN, Cruveiller S, Médigue C, Lenski RE, Barrick JE, Schneider D.

MBio. 2014 Sep 9;5(5):e01377-14. doi: 10.1128/mBio.01377-14.

10.

Characterization of a P1-like bacteriophage carrying an SHV-2 extended-spectrum β-lactamase from an Escherichia coli strain.

Billard-Pomares T, Fouteau S, Jacquet ME, Roche D, Barbe V, Castellanos M, Bouet JY, Cruveiller S, Médigue C, Blanco J, Clermont O, Denamur E, Branger C.

Antimicrob Agents Chemother. 2014 Nov;58(11):6550-7. doi: 10.1128/AAC.03183-14. Epub 2014 Aug 18.

11.

Profiling the orphan enzymes.

Sorokina M, Stam M, Médigue C, Lespinet O, Vallenet D.

Biol Direct. 2014 Jun 6;9:10. doi: 10.1186/1745-6150-9-10. Review.

12.

Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii.

Ogier JC, Pagès S, Bisch G, Chiapello H, Médigue C, Rouy Z, Teyssier C, Vincent S, Tailliez P, Givaudan A, Gaudriault S.

Genome Biol Evol. 2014 Jun 5;6(6):1495-513. doi: 10.1093/gbe/evu119.

13.

Evolutionary history and genetic parallelism affect correlated responses to evolution.

Le Gac M, Cooper TF, Cruveiller S, Médigue C, Schneider D.

Mol Ecol. 2013 Jun;22(12):3292-3303.

PMID:
24624420
14.

Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli.

Plucain J, Hindré T, Le Gac M, Tenaillon O, Cruveiller S, Médigue C, Leiby N, Harcombe WR, Marx CJ, Lenski RE, Schneider D.

Science. 2014 Mar 21;343(6177):1366-9. doi: 10.1126/science.1248688. Epub 2014 Mar 6.

PMID:
24603152
15.

Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms.

Ramos PI, Picão RC, Almeida LG, Lima NC, Girardello R, Vivan AC, Xavier DE, Barcellos FG, Pelisson M, Vespero EC, Médigue C, Vasconcelos AT, Gales AC, Nicolás MF.

BMC Genomics. 2014 Jan 22;15:54. doi: 10.1186/1471-2164-15-54.

16.

Revealing the hidden functional diversity of an enzyme family.

Bastard K, Smith AA, Vergne-Vaxelaire C, Perret A, Zaparucha A, De Melo-Minardi R, Mariage A, Boutard M, Debard A, Lechaplais C, Pelle C, Pellouin V, Perchat N, Petit JL, Kreimeyer A, Medigue C, Weissenbach J, Artiguenave F, De Berardinis V, Vallenet D, Salanoubat M.

Nat Chem Biol. 2014 Jan;10(1):42-9. doi: 10.1038/nchembio.1387. Epub 2013 Nov 17.

PMID:
24240508
17.

A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa.

Humbert JF, Barbe V, Latifi A, Gugger M, Calteau A, Coursin T, Lajus A, Castelli V, Oztas S, Samson G, Longin C, Medigue C, de Marsac NT.

PLoS One. 2013 Aug 12;8(8):e70747. doi: 10.1371/journal.pone.0070747. eCollection 2013.

18.

Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp. QH-2 strain.

Ji B, Zhang SD, Arnoux P, Rouy Z, Alberto F, Philippe N, Murat D, Zhang WJ, Rioux JB, Ginet N, Sabaty M, Mangenot S, Pradel N, Tian J, Yang J, Zhang L, Zhang W, Pan H, Henrissat B, Coutinho PM, Li Y, Xiao T, Médigue C, Barbe V, Pignol D, Talla E, Wu LF.

Environ Microbiol. 2014 Feb;16(2):525-44. doi: 10.1111/1462-2920.12180. Epub 2013 Jul 10.

PMID:
23841906
19.

Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits.

Goudenège D, Labreuche Y, Krin E, Ansquer D, Mangenot S, Calteau A, Médigue C, Mazel D, Polz MF, Le Roux F.

ISME J. 2013 Oct;7(10):1985-96. doi: 10.1038/ismej.2013.90. Epub 2013 Jun 6.

20.

Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

Andres J, Arsène-Ploetze F, Barbe V, Brochier-Armanet C, Cleiss-Arnold J, Coppée JY, Dillies MA, Geist L, Joublin A, Koechler S, Lassalle F, Marchal M, Médigue C, Muller D, Nesme X, Plewniak F, Proux C, Ramírez-Bahena MH, Schenowitz C, Sismeiro O, Vallenet D, Santini JM, Bertin PN.

Genome Biol Evol. 2013;5(5):934-53. doi: 10.1093/gbe/evt061.

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