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Items: 1 to 20 of 80

1.

Interferon-driven alterations of the host's amino acid metabolism in the pathogenesis of typhoid fever.

Blohmke CJ, Darton TC, Jones C, Suarez NM, Waddington CS, Angus B, Zhou L, Hill J, Clare S, Kane L, Mukhopadhyay S, Schreiber F, Duque-Correa MA, Wright JC, Roumeliotis TI, Yu L, Choudhary JS, Mejias A, Ramilo O, Shanyinde M, Sztein MB, Kingsley RA, Lockhart S, Levine MM, Lynn DJ, Dougan G, Pollard AJ.

J Exp Med. 2016 May 23. pii: jem.20151025. [Epub ahead of print]

PMID:
27217537
2.

DyNet: visualization and analysis of dynamic molecular interaction networks.

Goenawan IH, Bryan K, Lynn DJ.

Bioinformatics. 2016 May 3. pii: btw187. [Epub ahead of print]

3.

HiQuant: Rapid Postquantification Analysis of Large-Scale MS-Generated Proteomics Data.

Bryan K, Jarboui MA, Raso C, Bernal-Llinares M, McCann B, Rauch J, Boldt K, Lynn DJ.

J Proteome Res. 2016 May 16. [Epub ahead of print]

PMID:
27086506
4.

Using biological networks to integrate, visualize and analyze genomics data.

Charitou T, Bryan K, Lynn DJ.

Genet Sel Evol. 2016 Mar 31;48:27. doi: 10.1186/s12711-016-0205-1. Review.

5.

A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility QTL on chromosome 23.

Richardson IW, Berry DP, Wiencko HL, Higgins IM, More SJ, McClure J, Lynn DJ, Bradley DG.

Genet Sel Evol. 2016 Mar 9;48:19. doi: 10.1186/s12711-016-0197-x.

6.

Erratum to: 'Integrated analysis of the local and systemic changes preceding the development of post-partum cytological endometritis'.

Foley C, Chapwanya A, Callanan JJ, Whiston R, Miranda-CasoLuengo R, Lu J, Meijer WG, Lynn DJ, O'Farrelly C, Meade KG.

BMC Genomics. 2015 Dec 10;16:1050. doi: 10.1186/s12864-015-2205-x. No abstract available.

7.

Whole blood gene expression profiling of neonates with confirmed bacterial sepsis.

Dickinson P, Smith CL, Forster T, Craigon M, Ross AJ, Khondoker MR, Ivens A, Lynn DJ, Orme J, Jackson A, Lacaze P, Flanagan KL, Stenson BJ, Ghazal P.

Genom Data. 2014 Nov 15;3:41-8. doi: 10.1016/j.gdata.2014.11.003. eCollection 2015 Mar.

8.

Integrated analysis of the local and systemic changes preceding the development of post-partum cytological endometritis.

Foley C, Chapwanya A, Callanan JJ, Whiston R, Miranda-CasoLuengo R, Lu J, Meijer WG, Lynn DJ, O' Farrelly C, Meade KG.

BMC Genomics. 2015 Oct 19;16:811. doi: 10.1186/s12864-015-1967-5. Erratum in: BMC Genomics. 2015;16:1050.

9.

CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization.

Frias S, Bryan K, Brinkman FS, Lynn DJ.

Database (Oxford). 2015 May 7;2015:bav041. doi: 10.1093/database/bav041. Print 2015.

10.

Changes in medical students' exposure to and attitudes about drug company interactions from 2003 to 2012: a multi-institutional follow-up survey.

Sierles FS, Kessler KH, Mintz M, Beck G, Starr S, Lynn DJ, Chao J, Cleary LM, Shore W, Stengel TL, Brodkey AC.

Acad Med. 2015 Aug;90(8):1137-46. doi: 10.1097/ACM.0000000000000686.

PMID:
25785675
11.

MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking.

Vegh P, Magee DA, Nalpas NC, Bryan K, McCabe MS, Browne JA, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ.

Tuberculosis (Edinb). 2015 Jan;95(1):60-7.

PMID:
25692199
12.

The Role of microRNAs in Bovine Infection and Immunity.

Lawless N, Vegh P, O'Farrelly C, Lynn DJ.

Front Immunol. 2014 Nov 27;5:611. doi: 10.3389/fimmu.2014.00611. eCollection 2014. Review.

13.

Identification of a human neonatal immune-metabolic network associated with bacterial infection.

Smith CL, Dickinson P, Forster T, Craigon M, Ross A, Khondoker MR, France R, Ivens A, Lynn DJ, Orme J, Jackson A, Lacaze P, Flanagan KL, Stenson BJ, Ghazal P.

Nat Commun. 2014 Aug 14;5:4649. doi: 10.1038/ncomms5649.

14.

The miRNAome of the postpartum dairy cow liver in negative energy balance.

Fatima A, Lynn DJ, O'Boyle P, Seoighe C, Morris D.

BMC Genomics. 2014 Apr 12;15:279. doi: 10.1186/1471-2164-15-279.

15.

MicroRNA regulation of bovine monocyte inflammatory and metabolic networks in an in vivo infection model.

Lawless N, Reinhardt TA, Bryan K, Baker M, Pesch B, Zimmerman D, Zuelke K, Sonstegard T, O'Farrelly C, Lippolis JD, Lynn DJ.

G3 (Bethesda). 2014 Jan 27;4(6):957-71. doi: 10.1534/g3.113.009936.

16.

Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures.

Foroushani AB, Brinkman FS, Lynn DJ.

PeerJ. 2013 Dec 19;1:e229. doi: 10.7717/peerj.229. eCollection 2013 Dec 19.

17.

A genome-wide association study for somatic cell score using the Illumina high-density bovine beadchip identifies several novel QTL potentially related to mastitis susceptibility.

Meredith BK, Berry DP, Kearney F, Finlay EK, Fahey AG, Bradley DG, Lynn DJ.

Front Genet. 2013 Nov 6;4:229. doi: 10.3389/fgene.2013.00229. eCollection 2013.

18.

Profiling microRNA expression in bovine alveolar macrophages using RNA-seq.

Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ.

Vet Immunol Immunopathol. 2013 Oct 1;155(4):238-44. doi: 10.1016/j.vetimm.2013.08.004. Epub 2013 Aug 24.

PMID:
24021155
19.

Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection.

Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ.

PLoS One. 2013;8(3):e57543. doi: 10.1371/journal.pone.0057543. Epub 2013 Mar 5.

20.

Messenger RNA sequence rather than protein sequence determines the level of self-synthesis and antigen presentation of the EBV-encoded antigen, EBNA1.

Tellam JT, Lekieffre L, Zhong J, Lynn DJ, Khanna R.

PLoS Pathog. 2012 Dec;8(12):e1003112. doi: 10.1371/journal.ppat.1003112. Epub 2012 Dec 27.

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