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Results: 1 to 20 of 69

1.

Identification of a human neonatal immune-metabolic network associated with bacterial infection.

Smith CL, Dickinson P, Forster T, Craigon M, Ross A, Khondoker MR, France R, Ivens A, Lynn DJ, Orme J, Jackson A, Lacaze P, Flanagan KL, Stenson BJ, Ghazal P.

Nat Commun. 2014 Aug 14;5:4649. doi: 10.1038/ncomms5649.

PMID:
25120092
[PubMed - in process]
2.

The miRNAome of the postpartum dairy cow liver in negative energy balance.

Fatima A, Lynn DJ, O'Boyle P, Seoighe C, Morris D.

BMC Genomics. 2014 Apr 12;15:279. doi: 10.1186/1471-2164-15-279.

PMID:
24725334
[PubMed - in process]
Free PMC Article
3.

MicroRNA regulation of bovine monocyte inflammatory and metabolic networks in an in vivo infection model.

Lawless N, Reinhardt TA, Bryan K, Baker M, Pesch B, Zimmerman D, Zuelke K, Sonstegard T, O'Farrelly C, Lippolis JD, Lynn DJ.

G3 (Bethesda). 2014 Jan 27;4(6):957-71. doi: 10.1534/g3.113.009936.

PMID:
24470219
[PubMed - in process]
Free PMC Article
4.

Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures.

Foroushani AB, Brinkman FS, Lynn DJ.

PeerJ. 2013 Dec 19;1:e229. doi: 10.7717/peerj.229. eCollection 2013 Dec 19.

PMID:
24432194
[PubMed]
Free PMC Article
5.

A genome-wide association study for somatic cell score using the Illumina high-density bovine beadchip identifies several novel QTL potentially related to mastitis susceptibility.

Meredith BK, Berry DP, Kearney F, Finlay EK, Fahey AG, Bradley DG, Lynn DJ.

Front Genet. 2013 Nov 6;4:229. doi: 10.3389/fgene.2013.00229. eCollection 2013.

PMID:
24223582
[PubMed]
Free PMC Article
6.

Profiling microRNA expression in bovine alveolar macrophages using RNA-seq.

Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ.

Vet Immunol Immunopathol. 2013 Oct 1;155(4):238-44. doi: 10.1016/j.vetimm.2013.08.004. Epub 2013 Aug 24.

PMID:
24021155
[PubMed - indexed for MEDLINE]
7.

Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection.

Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ.

PLoS One. 2013;8(3):e57543. doi: 10.1371/journal.pone.0057543. Epub 2013 Mar 5.

PMID:
23472090
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Messenger RNA sequence rather than protein sequence determines the level of self-synthesis and antigen presentation of the EBV-encoded antigen, EBNA1.

Tellam JT, Lekieffre L, Zhong J, Lynn DJ, Khanna R.

PLoS Pathog. 2012 Dec;8(12):e1003112. doi: 10.1371/journal.ppat.1003112. Epub 2012 Dec 27.

PMID:
23300450
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation.

Breuer K, Foroushani AK, Laird MR, Chen C, Sribnaia A, Lo R, Winsor GL, Hancock RE, Brinkman FS, Lynn DJ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1228-33. doi: 10.1093/nar/gks1147. Epub 2012 Nov 24.

PMID:
23180781
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Transcriptomic analysis of the stress response to weaning at housing in bovine leukocytes using RNA-seq technology.

O'Loughlin A, Lynn DJ, McGee M, Doyle S, McCabe M, Earley B.

BMC Genomics. 2012 Jun 18;13:250. doi: 10.1186/1471-2164-13-250.

PMID:
22708644
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Effective adjunctive therapy by an innate defense regulatory peptide in a preclinical model of severe malaria.

Achtman AH, Pilat S, Law CW, Lynn DJ, Janot L, Mayer ML, Ma S, Kindrachuk J, Finlay BB, Brinkman FS, Smyth GK, Hancock RE, Schofield L.

Sci Transl Med. 2012 May 23;4(135):135ra64. doi: 10.1126/scitranslmed.3003515.

PMID:
22623740
[PubMed - indexed for MEDLINE]
Free Article
12.

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium.

Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman FS, Cesareni G, Chatr-aryamontri A, Chautard E, Chen C, Dumousseau M, Goll J, Hancock RE, Hannick LI, Jurisica I, Khadake J, Lynn DJ, Mahadevan U, Perfetto L, Raghunath A, Ricard-Blum S, Roechert B, Salwinski L, Stümpflen V, Tyers M, Uetz P, Xenarios I, Hermjakob H.

Nat Methods. 2012 Apr;9(4):345-50. doi: 10.1038/nmeth.1931. Erratum in: Nat Methods. 2012 Jun;9(6):626. Brinkman, Fiona [corrected to Brinkman, Fiona S L]; Hancock, Robert [corrected to Hancock, Robert E W].

PMID:
22453911
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome-wide associations for milk production and somatic cell score in Holstein-Friesian cattle in Ireland.

Meredith BK, Kearney FJ, Finlay EK, Bradley DG, Fahey AG, Berry DP, Lynn DJ.

BMC Genet. 2012 Mar 26;13:21. doi: 10.1186/1471-2156-13-21.

PMID:
22449276
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis.

Magee DA, Taraktsoglou M, Killick KE, Nalpas NC, Browne JA, Park SD, Conlon KM, Lynn DJ, Hokamp K, Gordon SV, Gormley E, MacHugh DE.

PLoS One. 2012;7(2):e32034. doi: 10.1371/journal.pone.0032034. Epub 2012 Feb 22.

PMID:
22384131
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Efficacy and safety of an extended nevirapine regimen in infant children of breastfeeding mothers with HIV-1 infection for prevention of postnatal HIV-1 transmission (HPTN 046): a randomised, double-blind, placebo-controlled trial.

Coovadia HM, Brown ER, Fowler MG, Chipato T, Moodley D, Manji K, Musoke P, Stranix-Chibanda L, Chetty V, Fawzi W, Nakabiito C, Msweli L, Kisenge R, Guay L, Mwatha A, Lynn DJ, Eshleman SH, Richardson P, George K, Andrew P, Mofenson LM, Zwerski S, Maldonado Y; HPTN 046 protocol team.

Lancet. 2012 Jan 21;379(9812):221-8. doi: 10.1016/S0140-6736(11)61653-X. Epub 2011 Dec 22.

PMID:
22196945
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The human transcriptome during nontyphoid Salmonella and HIV coinfection reveals attenuated NFkappaB-mediated inflammation and persistent cell cycle disruption.

Schreiber F, Lynn DJ, Houston A, Peters J, Mwafulirwa G, Finlay BB, Brinkman FS, Hancock RE, Heyderman RS, Dougan G, Gordon MA.

J Infect Dis. 2011 Oct 15;204(8):1237-45. doi: 10.1093/infdis/jir512.

PMID:
21917897
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

PSICQUIC and PSISCORE: accessing and scoring molecular interactions.

Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, Chautard E, Dana JM, De Las Rivas J, Dumousseau M, Galeota E, Gaulton A, Goll J, Hancock RE, Isserlin R, Jimenez RC, Kerssemakers J, Khadake J, Lynn DJ, Michaut M, O'Kelly G, Ono K, Orchard S, Prieto C, Razick S, Rigina O, Salwinski L, Simonovic M, Velankar S, Winter A, Wu G, Bader GD, Cesareni G, Donaldson IM, Eisenberg D, Kleywegt GJ, Overington J, Ricard-Blum S, Tyers M, Albrecht M, Hermjakob H.

Nat Methods. 2011 Jun 29;8(7):528-9. doi: 10.1038/nmeth.1637. No abstract available.

PMID:
21716279
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Bovine proteins containing poly-glutamine repeats are often polymorphic and enriched for components of transcriptional regulatory complexes.

Whan V, Hobbs M, McWilliam S, Lynn DJ, Lutzow YS, Khatkar M, Barendse W, Raadsma H, Tellam RL.

BMC Genomics. 2010 Nov 23;11:654. doi: 10.1186/1471-2164-11-654.

PMID:
21092319
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The early whole-blood transcriptional signature of dengue virus and features associated with progression to dengue shock syndrome in Vietnamese children and young adults.

Hoang LT, Lynn DJ, Henn M, Birren BW, Lennon NJ, Le PT, Duong KT, Nguyen TT, Mai LN, Farrar JJ, Hibberd ML, Simmons CP.

J Virol. 2010 Dec;84(24):12982-94. doi: 10.1128/JVI.01224-10. Epub 2010 Oct 13.

PMID:
20943967
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The impact of a peer-designed and -led USMLE Step 1 review course: improvement in preparation and scores.

Alcamo AM, Davids AR, Way DP, Lynn DJ, Vandre DD.

Acad Med. 2010 Oct;85(10 Suppl):S45-8. doi: 10.1097/ACM.0b013e3181ed1cb9.

PMID:
20881702
[PubMed - indexed for MEDLINE]

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