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Results: 1 to 20 of 220

1.

The human skeletal muscle transcriptome: sex differences, alternative splicing, and tissue homogeneity assessed with RNA sequencing.

Lindholm ME, Huss M, Solnestam BW, Kjellqvist S, Lundeberg J, Sundberg CJ.

FASEB J. 2014 Jul 11. pii: fj.14-255000. [Epub ahead of print]

PMID:
25016029
[PubMed - as supplied by publisher]
2.

Fabrication and functionalization of PCB gold electrodes suitable for DNA-based electrochemical sensing.

Salvo P, Henry OY, Dhaenens K, Acero Sanchez JL, Gielen A, Werne Solnestam B, Lundeberg J, O'Sullivan CK, Vanfleteren J.

Biomed Mater Eng. 2014 Jan 1;24(4):1705-14. doi: 10.3233/BME-140982.

PMID:
24948454
[PubMed - in process]
3.

Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools.

Alexeyenko A, Nystedt B, Vezzi F, Sherwood E, Ye R, Knudsen B, Simonsen M, Turner B, de Jong P, Wu CC, Lundeberg J.

BMC Genomics. 2014 Jun 6;15:439. doi: 10.1186/1471-2164-15-439.

PMID:
24906298
[PubMed - in process]
Free PMC Article
4.

Forensic Informativity of ~3000 bp of Coding Sequence of Domestic Dog mtDNA.

Angleby H, Oskarsson M, Pang J, Zhang YP, Leitner T, Braham C, Arvestad L, Lundeberg J, Webb KM, Savolainen P.

J Forensic Sci. 2014 Jul;59(4):898-908. doi: 10.1111/1556-4029.12504. Epub 2014 May 11.

PMID:
24814664
[PubMed - in process]
5.

The age and genomic integrity of neurons after cortical stroke in humans.

Huttner HB, Bergmann O, Salehpour M, Rácz A, Tatarishvili J, Lindgren E, Csonka T, Csiba L, Hortobágyi T, Méhes G, Englund E, Solnestam BW, Zdunek S, Scharenberg C, Ström L, Ståhl P, Sigurgeirsson B, Dahl A, Schwab S, Possnert G, Bernard S, Kokaia Z, Lindvall O, Lundeberg J, Frisén J.

Nat Neurosci. 2014 Jun;17(6):801-3. doi: 10.1038/nn.3706. Epub 2014 Apr 20.

PMID:
24747576
[PubMed - in process]
6.

Sequencing degraded RNA addressed by 3' tag counting.

Sigurgeirsson B, Emanuelsson O, Lundeberg J.

PLoS One. 2014 Mar 14;9(3):e91851. doi: 10.1371/journal.pone.0091851. eCollection 2014.

PMID:
24632678
[PubMed - in process]
Free PMC Article
7.

Assessment of whole genome amplification for sequence capture and massively parallel sequencing.

Hasmats J, Gréen H, Orear C, Validire P, Huss M, Käller M, Lundeberg J.

PLoS One. 2014 Jan 7;9(1):e84785. doi: 10.1371/journal.pone.0084785. eCollection 2014.

PMID:
24409309
[PubMed - in process]
Free PMC Article
8.

Visual detection of DNA on paper chips.

Song Y, Gyarmati P, Araújo AC, Lundeberg J, Brumer H 3rd, Ståhl PL.

Anal Chem. 2014 Feb 4;86(3):1575-82. doi: 10.1021/ac403196b. Epub 2014 Jan 17.

PMID:
24383957
[PubMed - in process]
9.

Integrated molecular portrait of non-small cell lung cancers.

Lazar V, Suo C, Orear C, van den Oord J, Balogh Z, Guegan J, Job B, Meurice G, Ripoche H, Calza S, Hasmats J, Lundeberg J, Lacroix L, Vielh P, Dufour F, Lehtiö J, Napieralski R, Eggermont A, Schmitt M, Cadranel J, Besse B, Girard P, Blackhall F, Validire P, Soria JC, Dessen P, Hansson J, Pawitan Y.

BMC Med Genomics. 2013 Dec 3;6:53. doi: 10.1186/1755-8794-6-53.

PMID:
24299561
[PubMed - indexed for MEDLINE]
Free Article
10.

High expression of glycolytic and pigment proteins is associated with worse clinical outcome in stage III melanoma.

Falkenius J, Lundeberg J, Johansson H, Tuominen R, Frostvik-Stolt M, Hansson J, Egyhazi Brage S.

Melanoma Res. 2013 Dec;23(6):452-60. doi: 10.1097/CMR.0000000000000027.

PMID:
24128789
[PubMed - indexed for MEDLINE]
11.

The Norway spruce genome sequence and conifer genome evolution.

Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S.

Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22.

PMID:
23698360
[PubMed - indexed for MEDLINE]
12.

Hierarchical molecular tagging to resolve long continuous sequences by massively parallel sequencing.

Lundin S, Gruselius J, Nystedt B, Lexow P, Käller M, Lundeberg J.

Sci Rep. 2013;3:1186. doi: 10.1038/srep01186.

PMID:
23470464
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

TagGD: fast and accurate software for DNA Tag generation and demultiplexing.

Costea PI, Lundeberg J, Akan P.

PLoS One. 2013;8(3):e57521. doi: 10.1371/journal.pone.0057521. Epub 2013 Mar 4.

PMID:
23469199
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis.

Gioti A, Nystedt B, Li W, Xu J, Andersson A, Averette AF, Münch K, Wang X, Kappauf C, Kingsbury JM, Kraak B, Walker LA, Johansson HJ, Holm T, Lehtiö J, Stajich JE, Mieczkowski P, Kahmann R, Kennell JC, Cardenas ME, Lundeberg J, Saunders CW, Boekhout T, Dawson TL, Munro CA, de Groot PW, Butler G, Heitman J, Scheynius A.

MBio. 2013 Jan 22;4(1):e00572-12. doi: 10.1128/mBio.00572-12.

PMID:
23341551
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Hereditary uveal melanoma: a report of a germline mutation in BAP1.

Höiom V, Edsgärd D, Helgadottir H, Eriksson H, All-Ericsson C, Tuominen R, Ivanova I, Lundeberg J, Emanuelsson O, Hansson J.

Genes Chromosomes Cancer. 2013 Apr;52(4):378-84. doi: 10.1002/gcc.22035. Epub 2013 Jan 23.

PMID:
23341325
[PubMed - indexed for MEDLINE]
16.

Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines.

Akan P, Alexeyenko A, Costea PI, Hedberg L, Solnestam BW, Lundin S, Hällman J, Lundberg E, Uhlén M, Lundeberg J.

Genome Med. 2012 Nov 18;4(11):86. doi: 10.1186/gm387. eCollection 2012.

PMID:
23158748
[PubMed]
Free PMC Article
17.

Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs.

Solnestam BW, Stranneheim H, Hällman J, Käller M, Lundberg E, Lundeberg J, Akan P.

BMC Genomics. 2012 Oct 30;13:574. doi: 10.1186/1471-2164-13-574.

PMID:
23110385
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Gene expression profiles in paired gingival biopsies from periodontitis-affected and healthy tissues revealed by massively parallel sequencing.

Davanian H, Stranneheim H, Båge T, Lagervall M, Jansson L, Lundeberg J, Yucel-Lindberg T.

PLoS One. 2012;7(9):e46440. doi: 10.1371/journal.pone.0046440. Epub 2012 Sep 28.

PMID:
23029519
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Improved gap size estimation for scaffolding algorithms.

Sahlin K, Street N, Lundeberg J, Arvestad L.

Bioinformatics. 2012 Sep 1;28(17):2215-22.

PMID:
22923455
[PubMed - indexed for MEDLINE]
Free Article
20.

Stepping stones in DNA sequencing.

Stranneheim H, Lundeberg J.

Biotechnol J. 2012 Sep;7(9):1063-73. doi: 10.1002/biot.201200153. Epub 2012 Aug 8. Review.

PMID:
22887891
[PubMed - indexed for MEDLINE]
Free PMC Article

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