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Results: 1 to 20 of 144

1.

Identifying Ca2+ binding sites in proteins by Liquid Chromatography - Mass Spectrometry using Ca2+ directed dissociations.

Jamalian A, Sneekes EJ, Wienk H, Dekker LJ, Ruttink PJ, Ursem M, Luider TM, Burgers PC.

Mol Cell Proteomics. 2014 Jul 14. pii: mcp.M114.038182. [Epub ahead of print]

PMID:
25023127
[PubMed - as supplied by publisher]
Free Article
2.

De novo protein sequencing by combining top-down and bottom-up tandem mass spectra.

Liu X, Dekker LJ, Wu S, Vanduijn MM, Luider TM, Tolić N, Kou Q, Dvorkin M, Alexandrova S, Vyatkina K, Paša-Tolić L, Pevzner PA.

J Proteome Res. 2014 Jul 3;13(7):3241-8. doi: 10.1021/pr401300m. Epub 2014 Jun 18.

PMID:
24874765
[PubMed - in process]
3.

Serum kynurenine/tryptophan ratio is not a potential marker for detecting prostate cancer.

Rodríguez-Blanco G, Burgers PC, Dekker LJ, Vredenbregt-van den Berg MS, Ijzermans JN, Schenk-Braat EA, Jenster G, Luider TM.

Clin Biochem. 2014 May 13. pii: S0009-9120(14)00221-5. doi: 10.1016/j.clinbiochem.2014.05.001. [Epub ahead of print] No abstract available.

PMID:
24833358
[PubMed - as supplied by publisher]
4.

Peptides from the variable region of specific antibodies are shared among lung cancer patients.

de Costa D, Broodman I, Calame W, Stingl C, Dekker LJ, Vernhout RM, de Koning HJ, Hoogsteden HC, Sillevis Smitt PA, van Klaveren RJ, Luider TM, Vanduijn MM.

PLoS One. 2014 May 1;9(5):e96029. doi: 10.1371/journal.pone.0096029. eCollection 2014.

PMID:
24787687
[PubMed - in process]
Free PMC Article
5.

Uncovering effects of ex vivo protease activity during proteomics and peptidomics sample extraction in rat brain tissue by oxygen-18 labeling.

Stingl C, Söderquist M, Karlsson O, Borén M, Luider TM.

J Proteome Res. 2014 Jun 6;13(6):2807-17. doi: 10.1021/pr401232e. Epub 2014 May 1.

PMID:
24738752
[PubMed - in process]
6.

Serum levels of arachidonic acid metabolites change during prostate cancer progression.

Rodríguez-Blanco G, Burgers PC, Dekker LJ, Ijzermans JJ, Wildhagen MF, Schenk-Braat EA, Bangma CH, Jenster G, Luider TM.

Prostate. 2014 May;74(6):618-27. doi: 10.1002/pros.22779. Epub 2014 Jan 16.

PMID:
24435810
[PubMed - indexed for MEDLINE]
7.

Comparative proteome analysis revealing an 11-protein signature for aggressive triple-negative breast cancer.

Liu NQ, Stingl C, Look MP, Smid M, Braakman RB, De Marchi T, Sieuwerts AM, Span PN, Sweep FC, Linderholm BK, Mangia A, Paradiso A, Dirix LY, Van Laere SJ, Luider TM, Martens JW, Foekens JA, Umar A.

J Natl Cancer Inst. 2014 Feb;106(2):djt376. doi: 10.1093/jnci/djt376. Epub 2014 Jan 7.

PMID:
24399849
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Structural and expression differences between the vasculature of pilocytic astrocytomas and glioblastomas.

Mustafa D, Swagemakers S, French P, Luider TM, van der Spek P, Kremer A, Kros JM.

J Neuropathol Exp Neurol. 2013 Dec;72(12):1171-81. doi: 10.1097/NEN.0000000000000015.

PMID:
24226271
[PubMed - indexed for MEDLINE]
9.

Collagen peptides in urine: a new promising biomarker for the detection of colorectal liver metastases.

Bröker ME, Lalmahomed ZS, Roest HP, van Huizen NA, Dekker LJ, Calame W, Verhoef C, Ijzermans JN, Luider TM.

PLoS One. 2013 Aug 16;8(8):e70918. doi: 10.1371/journal.pone.0070918. eCollection 2013.

PMID:
23976965
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Cerebrospinal-fluid-derived immunoglobulin G of different multiple sclerosis patients shares mutated sequences in complementarity determining regions.

Singh V, Stoop MP, Stingl C, Luitwieler RL, Dekker LJ, van Duijn MM, Kreft KL, Luider TM, Hintzen RQ.

Mol Cell Proteomics. 2013 Dec;12(12):3924-34. doi: 10.1074/mcp.M113.030346. Epub 2013 Aug 22.

PMID:
23970564
[PubMed - indexed for MEDLINE]
11.

Quantitative proteomic analysis of microdissected breast cancer tissues: comparison of label-free and SILAC-based quantification with shotgun, directed, and targeted MS approaches.

Liu NQ, Dekker LJ, Stingl C, Güzel C, De Marchi T, Martens JW, Foekens JA, Luider TM, Umar A.

J Proteome Res. 2013 Oct 4;12(10):4627-41. doi: 10.1021/pr4005794. Epub 2013 Sep 13.

PMID:
23957277
[PubMed - indexed for MEDLINE]
12.

Serum proteomics in amnestic mild cognitive impairment.

Ijsselstijn L, Papma JM, Dekker LJ, Calame W, Stingl C, Koudstaal PJ, Prins ND, Sillevis Smitt PA, Luider TM.

Proteomics. 2013 Aug;13(16):2526-33. doi: 10.1002/pmic.201200190. Epub 2013 Jul 19.

PMID:
23868823
[PubMed - indexed for MEDLINE]
13.

Prolonged influenza virus shedding and emergence of antiviral resistance in immunocompromised patients and ferrets.

van der Vries E, Stittelaar KJ, van Amerongen G, Veldhuis Kroeze EJ, de Waal L, Fraaij PL, Meesters RJ, Luider TM, van der Nagel B, Koch B, Vulto AG, Schutten M, Osterhaus AD.

PLoS Pathog. 2013;9(5):e1003343. doi: 10.1371/journal.ppat.1003343. Epub 2013 May 23.

PMID:
23717200
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Acyclovir-resistant herpes simplex virus type 1 in intra-ocular fluid samples of herpetic uveitis patients.

van Velzen M, Missotten T, van Loenen FB, Meesters RJ, Luider TM, Baarsma GS, Osterhaus AD, Verjans GM.

J Clin Virol. 2013 Jul;57(3):215-21. doi: 10.1016/j.jcv.2013.03.014. Epub 2013 Apr 10.

PMID:
23582986
[PubMed - indexed for MEDLINE]
Free Article
15.

Small hydrophobic protein of human metapneumovirus does not affect virus replication and host gene expression in vitro.

de Graaf M, Herfst S, Aarbiou J, Burgers PC, Zaaraoui-Boutahar F, Bijl M, van Ijcken W, Schrauwen EJ, Osterhaus AD, Luider TM, Scholte BJ, Fouchier RA, Andeweg AC.

PLoS One. 2013;8(3):e58572. doi: 10.1371/journal.pone.0058572. Epub 2013 Mar 6.

PMID:
23484037
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Comparative study of targeted and label-free mass spectrometry methods for protein quantification.

IJsselstijn L, Stoop MP, Stingl C, Sillevis Smitt PA, Luider TM, Dekker LJ.

J Proteome Res. 2013 Apr 5;12(4):2005-11. doi: 10.1021/pr301221f. Epub 2013 Mar 21.

PMID:
23464858
[PubMed - in process]
17.

Effects of natalizumab treatment on the cerebrospinal fluid proteome of multiple sclerosis patients.

Stoop MP, Singh V, Stingl C, Martin R, Khademi M, Olsson T, Hintzen RQ, Luider TM.

J Proteome Res. 2013 Mar 1;12(3):1101-7. doi: 10.1021/pr3012107. Epub 2013 Feb 4.

PMID:
23339689
[PubMed - indexed for MEDLINE]
18.

Measuring methotrexate polyglutamates in red blood cells: a new LC-MS/MS-based method.

den Boer E, Meesters RJ, van Zelst BD, Luider TM, Hazes JM, Heil SG, de Jonge R.

Anal Bioanal Chem. 2013 Feb;405(5):1673-81. doi: 10.1007/s00216-012-6581-7. Epub 2012 Dec 14.

PMID:
23239179
[PubMed - indexed for MEDLINE]
19.

SIMPATIQCO: a server-based software suite which facilitates monitoring the time course of LC-MS performance metrics on Orbitrap instruments.

Pichler P, Mazanek M, Dusberger F, Weilnböck L, Huber CG, Stingl C, Luider TM, Straube WL, Köcher T, Mechtler K.

J Proteome Res. 2012 Nov 2;11(11):5540-7. doi: 10.1021/pr300163u. Epub 2012 Oct 22.

PMID:
23088386
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Dried matrix on paper disks: the next generation DBS microsampling technique for managing the hematocrit effect in DBS analysis.

Meesters RJ, Zhang J, van Huizen NA, Hooff GP, Gruters RA, Luider TM.

Bioanalysis. 2012 Aug;4(16):2027-35. doi: 10.4155/bio.12.175.

PMID:
22946918
[PubMed - indexed for MEDLINE]

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