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Results: 18

1.

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.

Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, Fuentes-Soriano S, Wu LS, Gilbert D, Marçais G, Roberts M, Holt C, Yandell M, Davis JM, Smith KE, Dean JF, Lorenz WW, Whetten RW, Sederoff R, Wheeler N, McGuire PE, Main D, Loopstra CA, Mockaitis K, Dejong PJ, Yorke JA, Salzberg SL, Langley CH.

Genome Biol. 2014 Mar 20;15(3):R59. [Epub ahead of print]

PMID:
24647006
[PubMed - as supplied by publisher]
Free PMC Article
2.

Transcriptomic analysis highlights epigenetic and transcriptional regulation during zygotic embryo development of Pinus pinaster.

de Vega-Bartol JJ, Simões M, Lorenz WW, Rodrigues AS, Alba R, Dean JF, Miguel CM.

BMC Plant Biol. 2013 Aug 30;13:123. doi: 10.1186/1471-2229-13-123.

PMID:
23987738
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation.

Howe GT, Yu J, Knaus B, Cronn R, Kolpak S, Dolan P, Lorenz WW, Dean JF.

BMC Genomics. 2013 Feb 28;14:137. doi: 10.1186/1471-2164-14-137.

PMID:
23445355
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Biomarker genes highlight intraspecific and interspecific variations in the responses of Pinus taeda L. and Pinus radiata D. Don to Sirex noctilio F. acid gland secretions.

Bordeaux JM, Lorenz WW, Dean JF.

Tree Physiol. 2012 Oct;32(10):1302-12. doi: 10.1093/treephys/tps091. Epub 2012 Oct 5.

PMID:
23042767
[PubMed - indexed for MEDLINE]
5.

The phenylalanine ammonia lyase (PAL) gene family shows a gymnosperm-specific lineage.

Bagal UR, Leebens-Mack JH, Lorenz WW, Dean JF.

BMC Genomics. 2012 Jun 11;13 Suppl 3:S1. doi: 10.1186/1471-2164-13-S3-S1.

PMID:
22759610
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.).

Lorenz WW, Alba R, Yu YS, Bordeaux JM, Simões M, Dean JF.

BMC Genomics. 2011 May 24;12:264. doi: 10.1186/1471-2164-12-264.

PMID:
21609476
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

An improved method of RNA isolation from loblolly pine (P. taeda L.) and other conifer species.

Lorenz WW, Yu YS, Dean JF.

J Vis Exp. 2010 Feb 22;(36). pii: 1751. doi: 10.3791/1751.

PMID:
20177393
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Processing the loblolly pine PtGen2 cDNA microarray.

Lorenz WW, Yu YS, Simões M, Dean JF.

J Vis Exp. 2009 Mar 20;(25). pii: 1182. doi: 10.3791/1182.

PMID:
19305380
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Characterization of a 1-aminocyclopropane-1-carboxylate synthase gene from loblolly pine (Pinus taeda L.).

Barnes JR, Lorenz WW, Dean JF.

Gene. 2008 Apr 30;413(1-2):18-31. doi: 10.1016/j.gene.2007.12.024. Epub 2008 Jan 24.

PMID:
18328643
[PubMed - indexed for MEDLINE]
10.

Water stress-responsive genes in loblolly pine (Pinus taeda) roots identified by analyses of expressed sequence tag libraries.

Lorenz WW, Sun F, Liang C, Kolychev D, Wang H, Zhao X, Cordonnier-Pratt MM, Pratt LH, Dean JF.

Tree Physiol. 2006 Jan;26(1):1-16.

PMID:
16203709
[PubMed - indexed for MEDLINE]
11.

SAGE analysis of transcriptome responses in Arabidopsis roots exposed to 2,4,6-trinitrotoluene.

Ekman DR, Lorenz WW, Przybyla AE, Wolfe NL, Dean JF.

Plant Physiol. 2003 Nov;133(3):1397-406. Epub 2003 Oct 9.

PMID:
14551330
[PubMed - indexed for MEDLINE]
Free PMC Article
12.
13.

Oxidation of phenolate siderophores by the multicopper oxidase encoded by the Escherichia coli yacK gene.

Kim C, Lorenz WW, Hoopes JT, Dean JF.

J Bacteriol. 2001 Aug;183(16):4866-75.

PMID:
11466290
[PubMed - indexed for MEDLINE]
Free PMC Article
14.
16.

Expression of the Renilla reniformis luciferase gene in mammalian cells.

Lorenz WW, Cormier MJ, O'Kane DJ, Hua D, Escher AA, Szalay AA.

J Biolumin Chemilumin. 1996 Jan-Feb;11(1):31-7.

PMID:
8686494
[PubMed - indexed for MEDLINE]
17.

The sea pansy Renilla reniformis luciferase serves as a sensitive bioluminescent reporter for differential gene expression in Candida albicans.

Srikantha T, Klapach A, Lorenz WW, Tsai LK, Laughlin LA, Gorman JA, Soll DR.

J Bacteriol. 1996 Jan;178(1):121-9.

PMID:
8550405
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Isolation and expression of a cDNA encoding Renilla reniformis luciferase.

Lorenz WW, McCann RO, Longiaru M, Cormier MJ.

Proc Natl Acad Sci U S A. 1991 May 15;88(10):4438-42.

PMID:
1674607
[PubMed - indexed for MEDLINE]
Free PMC Article

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