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Items: 9

1.

Computing the probability of RNA hairpin and multiloop formation.

Ding Y, Lorenz WA, Dotu I, Senter E, Clote P.

J Comput Biol. 2014 Mar;21(3):201-18. doi: 10.1089/cmb.2013.0148. Epub 2014 Feb 21.

2.

Maximum expected accuracy structural neighbors of an RNA secondary structure.

Clote P, Lou F, Lorenz WA.

BMC Bioinformatics. 2012 Apr 12;13 Suppl 5:S6. doi: 10.1186/1471-2105-13-S5-S6.

3.

CodingMotif: exact determination of overrepresented nucleotide motifs in coding sequences.

Ding Y, Lorenz WA, Chuang JH.

BMC Bioinformatics. 2012 Feb 14;13:32. doi: 10.1186/1471-2105-13-32.

4.

Computing the partition function for kinetically trapped RNA secondary structures.

Lorenz WA, Clote P.

PLoS One. 2011 Jan 28;6(1):e16178. doi: 10.1371/journal.pone.0016178.

5.

Computing folding pathways between RNA secondary structures.

Dotu I, Lorenz WA, Van Hentenryck P, Clote P.

Nucleic Acids Res. 2010 Mar;38(5):1711-22. doi: 10.1093/nar/gkp1054. Epub 2009 Dec 30.

6.

RNA structural segmentation.

Dotú I, Lorenz WA, VAN Hentenryck P, Clote P.

Pac Symp Biocomput. 2010:57-68.

7.

Asymptotics of RNA shapes.

Lorenz WA, Ponty Y, Clote P.

J Comput Biol. 2008 Jan-Feb;15(1):31-63. doi: 10.1089/cmb.2006.0153.

PMID:
18257676
8.

DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.

Ferrè F, Ponty Y, Lorenz WA, Clote P.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W659-68. Epub 2007 Jun 13.

9.

Three-locus and four-locus QTL interactions influence mouse insulin-like growth factor-I.

Hanlon P, Lorenz WA, Shao Z, Harper JM, Galecki AT, Miller RA, Burke DT.

Physiol Genomics. 2006 Jun 16;26(1):46-54.

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