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Results: 1 to 20 of 22

1.

Global gene expression and focused knockout analysis reveals genes associated with fungal fruiting body development in Neurospora crassa.

Wang Z, Lopez-Giraldez F, Lehr N, Farré M, Common R, Trail F, Townsend JP.

Eukaryot Cell. 2014 Jan;13(1):154-69. doi: 10.1128/EC.00248-13. Epub 2013 Nov 15.

PMID:
24243796
[PubMed - in process]
Free PMC Article
2.

Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs.

Thalmann O, Shapiro B, Cui P, Schuenemann VJ, Sawyer SK, Greenfield DL, Germonpré MB, Sablin MV, López-Giráldez F, Domingo-Roura X, Napierala H, Uerpmann HP, Loponte DM, Acosta AA, Giemsch L, Schmitz RW, Worthington B, Buikstra JE, Druzhkova A, Graphodatsky AS, Ovodov ND, Wahlberg N, Freedman AH, Schweizer RM, Koepfli KP, Leonard JA, Meyer M, Krause J, Pääbo S, Green RE, Wayne RK.

Science. 2013 Nov 15;342(6160):871-4. doi: 10.1126/science.1243650.

PMID:
24233726
[PubMed - indexed for MEDLINE]
3.

Phylogenetic and phylogenomic overview of the Polyporales.

Binder M, Justo A, Riley R, Salamov A, Lopez-Giraldez F, Sjökvist E, Copeland A, Foster B, Sun H, Larsson E, Larsson KH, Townsend J, Grigoriev IV, Hibbett DS.

Mycologia. 2013 Nov-Dec;105(6):1350-73. doi: 10.3852/13-003. Epub 2013 Aug 11.

PMID:
23935031
[PubMed - indexed for MEDLINE]
4.

Evaluating phylogenetic informativeness as a predictor of phylogenetic signal for metazoan, fungal, and mammalian phylogenomic data sets.

López-Giráldez F, Moeller AH, Townsend JP.

Biomed Res Int. 2013;2013:621604. doi: 10.1155/2013/621604. Epub 2013 Jun 26.

PMID:
23878813
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Molecular chaperone Hsp110 rescues a vesicle transport defect produced by an ALS-associated mutant SOD1 protein in squid axoplasm.

Song Y, Nagy M, Ni W, Tyagi NK, Fenton WA, López-Giráldez F, Overton JD, Horwich AL, Brady ST.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5428-33. doi: 10.1073/pnas.1303279110. Epub 2013 Mar 18.

PMID:
23509252
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology.

Sikhakolli UR, López-Giráldez F, Li N, Common R, Townsend JP, Trail F.

Fungal Genet Biol. 2012 Aug;49(8):663-73. doi: 10.1016/j.fgb.2012.05.009. Epub 2012 Jun 15.

PMID:
22705880
[PubMed - indexed for MEDLINE]
7.

Sex-specific gene expression during asexual development of Neurospora crassa.

Wang Z, Kin K, López-Giráldez F, Johannesson H, Townsend JP.

Fungal Genet Biol. 2012 Jul;49(7):533-43. doi: 10.1016/j.fgb.2012.05.004. Epub 2012 May 22.

PMID:
22626843
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

RBE controls microRNA164 expression to effect floral organogenesis.

Huang T, López-Giráldez F, Townsend JP, Irish VF.

Development. 2012 Jun;139(12):2161-9. doi: 10.1242/dev.075069. Epub 2012 May 9.

PMID:
22573623
[PubMed - indexed for MEDLINE]
Free Article
9.

Assessing the role of tandem repeats in shaping the genomic architecture of great apes.

Farré M, Bosch M, López-Giráldez F, Ponsà M, Ruiz-Herrera A.

PLoS One. 2011;6(11):e27239. doi: 10.1371/journal.pone.0027239. Epub 2011 Nov 4.

PMID:
22076140
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

PhyDesign: an online application for profiling phylogenetic informativeness.

López-Giráldez F, Townsend JP.

BMC Evol Biol. 2011 May 31;11:152. doi: 10.1186/1471-2148-11-152.

PMID:
21627831
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Tasting soil fungal diversity with earth tongues: phylogenetic test of SATé alignments for environmental ITS data.

Wang Z, Nilsson RH, Lopez-Giraldez F, Zhuang WY, Dai YC, Johnston PR, Townsend JP.

PLoS One. 2011 Apr 21;6(4):e19039. doi: 10.1371/journal.pone.0019039.

PMID:
21533038
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Multi-targeted priming for genome-wide gene expression assays.

Adomas AB, Lopez-Giraldez F, Clark TA, Wang Z, Townsend JP.

BMC Genomics. 2010 Aug 17;11:477. doi: 10.1186/1471-2164-11-477.

PMID:
20716356
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Optimal selection of gene and ingroup taxon sampling for resolving phylogenetic relationships.

Townsend JP, Lopez-Giraldez F.

Syst Biol. 2010 Jul;59(4):446-57. doi: 10.1093/sysbio/syq025. Epub 2010 May 19.

PMID:
20547780
[PubMed - indexed for MEDLINE]
14.

LOX: inferring Level Of eXpression from diverse methods of census sequencing.

Zhang Z, López-Giráldez F, Townsend JP.

Bioinformatics. 2010 Aug 1;26(15):1918-9. doi: 10.1093/bioinformatics/btq303. Epub 2010 Jun 10.

PMID:
20538728
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits.

Schoch CL, Sung GH, López-Giráldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Gueidan C, Andrie RM, Trippe K, Ciufetti LM, Wynns A, Fraker E, Hodkinson BP, Bonito G, Groenewald JZ, Arzanlou M, de Hoog GS, Crous PW, Hewitt D, Pfister DH, Peterson K, Gryzenhout M, Wingfield MJ, Aptroot A, Suh SO, Blackwell M, Hillis DM, Griffith GW, Castlebury LA, Rossman AY, Lumbsch HT, Lücking R, Büdel B, Rauhut A, Diederich P, Ertz D, Geiser DM, Hosaka K, Inderbitzin P, Kohlmeyer J, Volkmann-Kohlmeyer B, Mostert L, O'Donnell K, Sipman H, Rogers JD, Shoemaker RA, Sugiyama J, Summerbell RC, Untereiner W, Johnston PR, Stenroos S, Zuccaro A, Dyer PS, Crittenden PD, Cole MS, Hansen K, Trappe JM, Yahr R, Lutzoni F, Spatafora JW.

Syst Biol. 2009 Apr;58(2):224-39. doi: 10.1093/sysbio/syp020. Epub 2009 Jun 4.

PMID:
20525580
[PubMed - indexed for MEDLINE]
16.

Measuring transcription factor-binding site turnover: a maximum likelihood approach using phylogenies.

Otto W, Stadler PF, López-Giraldéz F, Townsend JP, Lynch VJ, Wagner GP.

Genome Biol Evol. 2009 May 25;1:85-98. doi: 10.1093/gbe/evp010.

PMID:
20333180
[PubMed]
Free PMC Article
17.

The phylogenetic informativeness of nucleotide and amino acid sequences for reconstructing the vertebrate tree.

Townsend JP, López-Giráldez F, Friedman R.

J Mol Evol. 2008 Nov;67(5):437-47. doi: 10.1007/s00239-008-9142-0. Epub 2008 Aug 12.

PMID:
18696029
[PubMed - indexed for MEDLINE]
18.

RPS4Y gene family evolution in primates.

Andrés O, Kellermann T, López-Giráldez F, Rozas J, Domingo-Roura X, Bosch M.

BMC Evol Biol. 2008 May 13;8:142. doi: 10.1186/1471-2148-8-142.

PMID:
18477388
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

High incidence of nonslippage mechanisms generating variability and complexity in eurasian badger microsatellites.

López-Giráldez F, Marmi J, Domingo-Roura X.

J Hered. 2007 Sep-Oct;98(6):620-8. Epub 2007 Aug 28.

PMID:
17728273
[PubMed - indexed for MEDLINE]
Free Article
20.

Analyses of carnivore microsatellites and their intimate association with tRNA-derived SINEs.

López-Giráldez F, Andrés O, Domingo-Roura X, Bosch M.

BMC Genomics. 2006 Oct 23;7:269.

PMID:
17059596
[PubMed - indexed for MEDLINE]
Free PMC Article

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