Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 51

1.

A platform independent RNA-Seq protocol for the detection of transcriptome complexity.

Calabrese C, Mangiulli M, Manzari C, Paluscio AM, Caratozzolo MF, Marzano F, Kurelac I, D'Erchia AM, D'Elia D, Licciulli F, Liuni S, Picardi E, Attimonelli M, Gasparre G, Porcelli AM, Pesole G, Sbisà E, Tullo A.

BMC Genomics. 2013 Dec 5;14:855. doi: 10.1186/1471-2164-14-855.

PMID:
24308330
[PubMed - in process]
Free PMC Article
2.

Regulation of the expression of CLU isoforms in endometrial proliferative diseases.

Fuzio P, Valletti A, Napoli A, Napoli G, Cormio G, Selvaggi L, Liuni S, Pesole G, Maiorano E, Perlino E.

Int J Oncol. 2013 Jun;42(6):1929-44. doi: 10.3892/ijo.2013.1894. Epub 2013 Apr 11.

PMID:
23589125
[PubMed - indexed for MEDLINE]
3.

Reference databases for taxonomic assignment in metagenomics.

Santamaria M, Fosso B, Consiglio A, De Caro G, Grillo G, Licciulli F, Liuni S, Marzano M, Alonso-Alemany D, Valiente G, Pesole G.

Brief Bioinform. 2012 Nov;13(6):682-95. doi: 10.1093/bib/bbs036. Epub 2012 Jul 10. Review.

PMID:
22786784
[PubMed - indexed for MEDLINE]
4.

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments.

Consiglio A, Carella M, De Caro G, Delle Foglie G, Giovannelli C, Grillo G, Ianigro M, Licciulli F, Palumbo O, Piepoli A, Ranieri E, Liuni S.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S21. doi: 10.1186/1471-2105-13-S4-S21.

PMID:
22536968
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

PlantPIs--an interactive web resource on plant protease inhibitors.

Consiglio A, Grillo G, Licciulli F, Ceci LR, Liuni S, Losito N, Volpicella M, Gallerani R, De Leo F.

Curr Protein Pept Sci. 2011 Aug;12(5):448-54. Review.

PMID:
21418024
[PubMed - indexed for MEDLINE]
6.

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.

Grillo G, Turi A, Licciulli F, Mignone F, Liuni S, Banfi S, Gennarino VA, Horner DS, Pavesi G, Picardi E, Pesole G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D75-80. doi: 10.1093/nar/gkp902. Epub 2009 Oct 30.

PMID:
19880380
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.

Horner DS, Pavesi G, Castrignanò T, De Meo PD, Liuni S, Sammeth M, Picardi E, Pesole G.

Brief Bioinform. 2010 Mar;11(2):181-97. doi: 10.1093/bib/bbp046. Epub 2009 Oct 27. Review.

PMID:
19864250
[PubMed - indexed for MEDLINE]
Free Article
8.

Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data.

Maglietta R, Piepoli A, Catalano D, Licciulli F, Carella M, Liuni S, Pesole G, Perri F, Ancona N.

Bioinformatics. 2007 Aug 15;23(16):2063-72. Epub 2007 May 31.

PMID:
17540679
[PubMed - indexed for MEDLINE]
Free Article
9.

p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.

Sbisà E, Catalano D, Grillo G, Licciulli F, Turi A, Liuni S, Pesole G, De Grassi A, Caratozzolo MF, D'Erchia AM, Navarro B, Tullo A, Saccone C, Gisel A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S20.

PMID:
17430565
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Selection of relevant genes in cancer diagnosis based on their prediction accuracy.

Maglietta R, D'Addabbo A, Piepoli A, Perri F, Liuni S, Pesole G, Ancona N.

Artif Intell Med. 2007 May;40(1):29-44. Epub 2006 Aug 22.

PMID:
16920342
[PubMed - indexed for MEDLINE]
11.

On the statistical assessment of classifiers using DNA microarray data.

Ancona N, Maglietta R, Piepoli A, D'Addabbo A, Cotugno R, Savino M, Liuni S, Carella M, Pesole G, Perri F.

BMC Bioinformatics. 2006 Aug 19;7:387.

PMID:
16919171
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Regularized Least Squares Cancer classifiers from DNA microarray data.

Ancona N, Maglietta R, D'Addabbo A, Liuni S, Pesole G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S2.

PMID:
16351746
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A new strategy to identify novel genes and gene isoforms: Analysis of human chromosomes 15, 21 and 22.

Rè M, Mignone F, Iacono M, Grillo G, Liuni S, Pesole G.

Gene. 2006 Jan 3;365:35-40. Epub 2005 Dec 15.

PMID:
16343814
[PubMed - indexed for MEDLINE]
14.

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.

Castrignanò T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G.

Bioinformatics. 2006 Feb 15;22(4):497-9. Epub 2005 Nov 2.

PMID:
16267081
[PubMed - indexed for MEDLINE]
Free Article
15.

The transcriptional landscape of the mammalian genome.

Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schönbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y; FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group).

Science. 2005 Sep 2;309(5740):1559-63. Erratum in: Science. 2006 Mar 24;311(5768):1713.

PMID:
16141072
[PubMed - indexed for MEDLINE]
Free Article
16.

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.

Mignone F, Grillo G, Licciulli F, Iacono M, Liuni S, Kersey PJ, Duarte J, Saccone C, Pesole G.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D141-6.

PMID:
15608165
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions.

Gisel A, Panetta M, Grillo G, Licciulli VF, Liuni S, Saccone C, Pesole G.

Bioinformatics. 2004 Dec 12;20(18):3676-9. Epub 2004 Jul 15.

PMID:
15256403
[PubMed - indexed for MEDLINE]
Free Article
18.

CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.

Castrignanò T, Canali A, Grillo G, Liuni S, Mignone F, Pesole G.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W624-7.

PMID:
15215464
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Computational identification of protein coding potential of conserved sequence tags through cross-species evolutionary analysis.

Mignone F, Grillo G, Liuni S, Pesole G.

Nucleic Acids Res. 2003 Aug 1;31(15):4639-45.

PMID:
12888525
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

PatSearch: A program for the detection of patterns and structural motifs in nucleotide sequences.

Grillo G, Licciulli F, Liuni S, Sbisà E, Pesole G.

Nucleic Acids Res. 2003 Jul 1;31(13):3608-12.

PMID:
12824377
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk