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Results: 1 to 20 of 41

1.

Copy number variation-based genome wide association study reveals additional variants contributing to meat quality in Swine.

Wang L, Xu L, Liu X, Zhang T, Li N, Hay EH, Zhang Y, Yan H, Zhao K, Liu GE, Zhang L, Wang L.

Sci Rep. 2015 Aug 3;5:12535. doi: 10.1038/srep12535.

PMID:
26234186
2.

RAPTR-SV: a hybrid method for the detection of structural variants.

Bickhart DM, Hutchison JL, Xu L, Schnabel RD, Taylor JF, Reecy JM, Schroeder S, Van Tassell CP, Sonstegard TS, Liu GE.

Bioinformatics. 2015 Jul 1;31(13):2084-90. doi: 10.1093/bioinformatics/btv086. Epub 2015 Feb 16.

PMID:
25686638
3.

Genomic signatures reveal new evidences for selection of important traits in domestic cattle.

Xu L, Bickhart DM, Cole JB, Schroeder SG, Song J, Tassell CP, Sonstegard TS, Liu GE.

Mol Biol Evol. 2015 Mar;32(3):711-25. doi: 10.1093/molbev/msu333. Epub 2014 Nov 26.

PMID:
25431480
4.

Co-expression analysis of fetal weight-related genes in ovine skeletal muscle during mid and late fetal development stages.

Xu L, Zhao F, Ren H, Li L, Lu J, Liu J, Zhang S, Liu GE, Song J, Zhang L, Wei C, Du L.

Int J Biol Sci. 2014 Sep 11;10(9):1039-50. doi: 10.7150/ijbs.9737. eCollection 2014.

5.

Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins.

Xu L, Cole JB, Bickhart DM, Hou Y, Song J, VanRaden PM, Sonstegard TS, Van Tassell CP, Liu GE.

BMC Genomics. 2014 Aug 15;15:683. doi: 10.1186/1471-2164-15-683.

6.

Transcriptome profiling of CTLs regulated by rapamycin using RNA-Seq.

Mattson E, Xu L, Li L, Liu GE, Xiao Z.

Immunogenetics. 2014 Nov;66(11):625-33. doi: 10.1007/s00251-014-0790-5. Epub 2014 Aug 13.

PMID:
25113844
7.

A high-resolution whole-genome map of the distinctive epigenomic landscape induced by butyrate in bovine cells.

Shin JH, Xu L, Li RW, Gao Y, Bickhart D, Liu GE, Baldwin R, Li CJ.

Anim Genet. 2014 Aug;45 Suppl 1:40-50. doi: 10.1111/age.12147. Epub 2014 Jul 2.

PMID:
24990294
8.

A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle.

Xu L, Hou Y, Bickhart DM, Song J, Van Tassell CP, Sonstegard TS, Liu GE.

Funct Integr Genomics. 2014 Jun;14(2):333-9. doi: 10.1007/s10142-014-0371-6. Epub 2014 Apr 10.

PMID:
24718732
9.

Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing.

Cui X, Hou Y, Yang S, Xie Y, Zhang S, Zhang Y, Zhang Q, Lu X, Liu GE, Sun D.

BMC Genomics. 2014 Mar 24;15:226. doi: 10.1186/1471-2164-15-226.

10.

The challenges and importance of structural variation detection in livestock.

Bickhart DM, Liu GE.

Front Genet. 2014 Feb 18;5:37. doi: 10.3389/fgene.2014.00037. eCollection 2014. Review.

11.

Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle.

Pérez O'Brien AM, Utsunomiya YT, Mészáros G, Bickhart DM, Liu GE, Van Tassell CP, Sonstegard TS, Da Silva MV, Garcia JF, Sölkner J.

Genet Sel Evol. 2014 Mar 4;46:19. doi: 10.1186/1297-9686-46-19.

12.

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping.

Porto-Neto LR, Sonstegard TS, Liu GE, Bickhart DM, Da Silva MV, Machado MA, Utsunomiya YT, Garcia JF, Gondro C, Van Tassell CP.

BMC Genomics. 2013 Dec 13;14:876. doi: 10.1186/1471-2164-14-876.

13.

Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification.

Shin JH, Li RW, Gao Y, Bickhart DM, Liu GE, Li W, Wu S, Li CJ.

Gene Regul Syst Bio. 2013 Mar 26;7:57-70. doi: 10.4137/GRSB.S11243. Print 2013.

14.

Fine mapping for Weaver syndrome in Brown Swiss cattle and the identification of 41 concordant mutations across NRCAM, PNPLA8 and CTTNBP2.

McClure M, Kim E, Bickhart D, Null D, Cooper T, Cole J, Wiggans G, Ajmone-Marsan P, Colli L, Santus E, Liu GE, Schroeder S, Matukumalli L, Van Tassell C, Sonstegard T.

PLoS One. 2013;8(3):e59251. doi: 10.1371/journal.pone.0059251. Epub 2013 Mar 20.

15.

Identification of candidate transcription factor binding sites in the cattle genome.

Bickhart DM, Liu GE.

Genomics Proteomics Bioinformatics. 2013 Jun;11(3):195-8. doi: 10.1016/j.gpb.2012.10.004. Epub 2013 Feb 1.

16.

Analysis of copy number variations in Holstein cows identify potential mechanisms contributing to differences in residual feed intake.

Hou Y, Bickhart DM, Chung H, Hutchison JL, Norman HD, Connor EE, Liu GE.

Funct Integr Genomics. 2012 Nov;12(4):717-23. doi: 10.1007/s10142-012-0295-y. Epub 2012 Sep 19.

PMID:
22991089
17.

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array.

Hou Y, Bickhart DM, Hvinden ML, Li C, Song J, Boichard DA, Fritz S, Eggen A, DeNise S, Wiggans GR, Sonstegard TS, Van Tassell CP, Liu GE.

BMC Genomics. 2012 Aug 6;13:376. doi: 10.1186/1471-2164-13-376.

18.

Copy number variation in the cattle genome.

Liu GE, Bickhart DM.

Funct Integr Genomics. 2012 Nov;12(4):609-24. doi: 10.1007/s10142-012-0289-9. Epub 2012 Jul 13. Review.

PMID:
22790923
19.

Copy number variation of individual cattle genomes using next-generation sequencing.

Bickhart DM, Hou Y, Schroeder SG, Alkan C, Cardone MF, Matukumalli LK, Song J, Schnabel RD, Ventura M, Taylor JF, Garcia JF, Van Tassell CP, Sonstegard TS, Eichler EE, Liu GE.

Genome Res. 2012 Apr;22(4):778-90. doi: 10.1101/gr.133967.111. Epub 2012 Feb 2.

20.

Refinement of Bos taurus sequence assembly based on BAC-FISH experiments.

Partipilo G, D'Addabbo P, Lacalandra GM, Liu GE, Rocchi M.

BMC Genomics. 2011 Dec 30;12:639. doi: 10.1186/1471-2164-12-639.

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