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Items: 1 to 20 of 78

1.

Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors.

Chen YC, Stuwe E, Luo Y, Ninova M, Le Thomas A, Rozhavskaya E, Li S, Vempati S, Laver JD, Patel DJ, Smibert CA, Lipshitz HD, Fejes Toth K, Aravin AA.

Mol Cell. 2016 Jul 7;63(1):97-109. doi: 10.1016/j.molcel.2016.05.010. Epub 2016 Jun 9.

PMID:
27292797
2.

A high-throughput pipeline for the production of synthetic antibodies for analysis of ribonucleoprotein complexes.

Na H, Laver JD, Jeon J, Singh F, Ancevicius K, Fan Y, Cao WX, Nie K, Yang Z, Luo H, Wang M, Rissland O, Westwood JT, Kim PM, Smibert CA, Lipshitz HD, Sidhu SS.

RNA. 2016 Apr;22(4):636-55. doi: 10.1261/rna.055186.115. Epub 2016 Feb 4.

PMID:
26847261
3.

A Smaug2-Based Translational Repression Complex Determines the Balance between Precursor Maintenance versus Differentiation during Mammalian Neurogenesis.

Amadei G, Zander MA, Yang G, Dumelie JG, Vessey JP, Lipshitz HD, Smibert CA, Kaplan DR, Miller FD.

J Neurosci. 2015 Nov 25;35(47):15666-81. doi: 10.1523/JNEUROSCI.2172-15.2015.

4.

The Maternal-to-Zygotic Transition. Preface.

Lipshitz HD.

Curr Top Dev Biol. 2015;113:xi-xiii. doi: 10.1016/S0070-2153(15)00076-9. No abstract available.

PMID:
26358880
5.

Regulation and Function of Maternal Gene Products During the Maternal-to-Zygotic Transition in Drosophila.

Laver JD, Marsolais AJ, Smibert CA, Lipshitz HD.

Curr Top Dev Biol. 2015;113:43-84. doi: 10.1016/bs.ctdb.2015.06.007. Epub 2015 Aug 14. Review.

PMID:
26358870
6.

Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition.

Laver JD, Li X, Ray D, Cook KB, Hahn NA, Nabeel-Shah S, Kekis M, Luo H, Marsolais AJ, Fung KY, Hughes TR, Westwood JT, Sidhu SS, Morris Q, Lipshitz HD, Smibert CA.

Genome Biol. 2015 May 12;16:94. doi: 10.1186/s13059-015-0659-4.

7.

Transcription gets to the checkpoint.

Laver JD, Lipshitz HD.

Cell. 2015 Mar 12;160(6):1043-4. doi: 10.1016/j.cell.2015.02.051.

8.

Drosophila Hindsight and mammalian RREB-1 are evolutionarily conserved DNA-binding transcriptional attenuators.

Ming L, Wilk R, Reed BH, Lipshitz HD.

Differentiation. 2013 Nov-Dec;86(4-5):159-70. doi: 10.1016/j.diff.2013.12.001. Epub 2014 Jan 11.

PMID:
24418439
9.

Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein.

Chen L, Dumelie JG, Li X, Cheng MH, Yang Z, Laver JD, Siddiqui NU, Westwood JT, Morris Q, Lipshitz HD, Smibert CA.

Genome Biol. 2014 Jan 7;15(1):R4. doi: 10.1186/gb-2014-15-1-r4.

10.

Staufen2 regulates neuronal target RNAs.

Heraud-Farlow JE, Sharangdhar T, Li X, Pfeifer P, Tauber S, Orozco D, Hörmann A, Thomas S, Bakosova A, Farlow AR, Edbauer D, Lipshitz HD, Morris QD, Bilban M, Doyle M, Kiebler MA.

Cell Rep. 2013 Dec 26;5(6):1511-8. doi: 10.1016/j.celrep.2013.11.039. Epub 2013 Dec 19.

11.

Finding the target sites of RNA-binding proteins.

Li X, Kazan H, Lipshitz HD, Morris QD.

Wiley Interdiscip Rev RNA. 2014 Jan-Feb;5(1):111-30. doi: 10.1002/wrna.1201. Epub 2013 Nov 11. Review.

12.

Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity.

Laver JD, Li X, Ancevicius K, Westwood JT, Smibert CA, Morris QD, Lipshitz HD.

Nucleic Acids Res. 2013 Nov;41(20):9438-60. doi: 10.1093/nar/gkt702. Epub 2013 Aug 13.

13.

A compendium of RNA-binding motifs for decoding gene regulation.

Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, Yarosh CA, Kelly SM, Nabet B, Mecenas D, Li W, Laishram RS, Qiao M, Lipshitz HD, Piano F, Corbett AH, Carstens RP, Frey BJ, Anderson RA, Lynch KW, Penalva LO, Lei EP, Fraser AG, Blencowe BJ, Morris QD, Hughes TR.

Nature. 2013 Jul 11;499(7457):172-7. doi: 10.1038/nature12311.

14.

HuR is required for IL-17-induced Act1-mediated CXCL1 and CXCL5 mRNA stabilization.

Herjan T, Yao P, Qian W, Li X, Liu C, Bulek K, Sun D, Yang WP, Zhu J, He A, Carman JA, Erzurum SC, Lipshitz HD, Fox PL, Hamilton TA, Li X.

J Immunol. 2013 Jul 15;191(2):640-9. doi: 10.4049/jimmunol.1203315. Epub 2013 Jun 14.

15.

Synthetic antibodies as tools to probe RNA-binding protein function.

Laver JD, Ancevicius K, Sollazzo P, Westwood JT, Sidhu SS, Lipshitz HD, Smibert CA.

Mol Biosyst. 2012 Jun;8(6):1650-7. doi: 10.1039/c2mb00007e. Epub 2012 Apr 5.

PMID:
22481296
16.

Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells.

Siddiqui NU, Li X, Luo H, Karaiskakis A, Hou H, Kislinger T, Westwood JT, Morris Q, Lipshitz HD.

Genome Biol. 2012 Feb 20;13(2):R11. doi: 10.1186/gb-2012-13-2-r11.

17.

Transcript clearance during the maternal-to-zygotic transition.

Walser CB, Lipshitz HD.

Curr Opin Genet Dev. 2011 Aug;21(4):431-43. doi: 10.1016/j.gde.2011.03.003. Epub 2011 Apr 14. Review.

PMID:
21497081
18.

Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure.

Li X, Quon G, Lipshitz HD, Morris Q.

RNA. 2010 Jun;16(6):1096-107. doi: 10.1261/rna.2017210. Epub 2010 Apr 23.

19.

A vertebrate Polycomb response element governs segmentation of the posterior hindbrain.

Sing A, Pannell D, Karaiskakis A, Sturgeon K, Djabali M, Ellis J, Lipshitz HD, Cordes SP.

Cell. 2009 Sep 4;138(5):885-97. doi: 10.1016/j.cell.2009.08.020.

20.

The maternal-to-zygotic transition: a play in two acts.

Tadros W, Lipshitz HD.

Development. 2009 Sep;136(18):3033-42. doi: 10.1242/dev.033183. Review.

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