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Items: 8


Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.

Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH.

BMC Bioinformatics. 2014 Nov 19;15:350. doi: 10.1186/s12859-014-0350-x.


Mesoaciditoga lauensis gen. nov., sp. nov., a moderately thermoacidophilic member of the order Thermotogales from a deep-sea hydrothermal vent.

Reysenbach AL, Liu Y, Lindgren AR, Wagner ID, Sislak CD, Mets A, Schouten S.

Int J Syst Evol Microbiol. 2013 Dec;63(Pt 12):4724-9. doi: 10.1099/ijs.0.050518-0. Epub 2013 Aug 19.


Cephalopod genomics: A plan of strategies and organization.

Albertin CB, Bonnaud L, Brown CT, Crookes-Goodson WJ, da Fonseca RR, Di Cristo C, Dilkes BP, Edsinger-Gonzales E, Freeman RM Jr, Hanlon RT, Koenig KM, Lindgren AR, Martindale MQ, Minx P, Moroz LL, Nödl MT, Nyholm SV, Ogura A, Pungor JR, Rosenthal JJ, Schwarz EM, Shigeno S, Strugnell JM, Wollesen T, Zhang G, Ragsdale CW.

Stand Genomic Sci. 2012 Oct 10;7(1):175-88. doi: 10.4056/sigs.3136559. Epub 2012 Sep 26.


Phylotranscriptomics to bring the understudied into the fold: monophyletic ostracoda, fossil placement, and pancrustacean phylogeny.

Oakley TH, Wolfe JM, Lindgren AR, Zaharoff AK.

Mol Biol Evol. 2013 Jan;30(1):215-33. doi: 10.1093/molbev/mss216. Epub 2012 Sep 12.


Molecular inference of phylogenetic relationships among Decapodiformes (Mollusca: Cephalopoda) with special focus on the squid order Oegopsida.

Lindgren AR.

Mol Phylogenet Evol. 2010 Jul;56(1):77-90. doi: 10.1016/j.ympev.2010.03.025. Epub 2010 Mar 27.


Evidence for a clade composed of molluscs with serially repeated structures: monoplacophorans are related to chitons.

Giribet G, Okusu A, Lindgren AR, Huff SW, Schrödl M, Nishiguchi MK.

Proc Natl Acad Sci U S A. 2006 May 16;103(20):7723-8. Epub 2006 May 4.


Evolutionary relationships among squids of the family Gonatidae (Mollusca: Cephalopoda) inferred from three mitochondrial loci.

Lindgren AR, Katugin ON, Amezquita E, Nishiguchi MK.

Mol Phylogenet Evol. 2005 Jul;36(1):101-11. Epub 2005 Feb 1.

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