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Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing.

Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF.

BMC Genomics. 2014 Aug 15;15:682. doi: 10.1186/1471-2164-15-682.


Protein substrates of a novel secretion system are numerous in the Bacteroidetes phylum and have in common a cleavable C-terminal secretion signal, extensive post-translational modification, and cell-surface attachment.

Veith PD, Nor Muhammad NA, Dashper SG, Likić VA, Gorasia DG, Chen D, Byrne SJ, Catmull DV, Reynolds EC.

J Proteome Res. 2013 Oct 4;12(10):4449-61. doi: 10.1021/pr400487b. Epub 2013 Sep 23.


A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters.

Celik N, Webb CT, Leyton DL, Holt KE, Heinz E, Gorrell R, Kwok T, Naderer T, Strugnell RA, Speed TP, Teasdale RD, Likić VA, Lithgow T.

PLoS One. 2012;7(8):e43245. doi: 10.1371/journal.pone.0043245. Epub 2012 Aug 14.


PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools.

O'Callaghan S, De Souza DP, Isaac A, Wang Q, Hodkinson L, Olshansky M, Erwin T, Appelbe B, Tull DL, Roessner U, Bacic A, McConville MJ, Likić VA.

BMC Bioinformatics. 2012 May 30;13:115. doi: 10.1186/1471-2105-13-115.


LeishCyc: a guide to building a metabolic pathway database and visualization of metabolomic data.

Saunders EC, MacRae JI, Naderer T, Ng M, McConville MJ, Likić VA.

Methods Mol Biol. 2012;881:505-29. doi: 10.1007/978-1-61779-827-6_17.


A small Tim homohexamer in the relict mitochondrion of Cryptosporidium.

Alcock F, Webb CT, Dolezal P, Hewitt V, Shingu-Vasquez M, Likić VA, Traven A, Lithgow T.

Mol Biol Evol. 2012 Jan;29(1):113-22. doi: 10.1093/molbev/msr165. Epub 2011 Oct 6.


Isotopomer profiling of Leishmania mexicana promastigotes reveals important roles for succinate fermentation and aspartate uptake in tricarboxylic acid cycle (TCA) anaplerosis, glutamate synthesis, and growth.

Saunders EC, Ng WW, Chambers JM, Ng M, Naderer T, Krömer JO, Likic VA, McConville MJ.

J Biol Chem. 2011 Aug 5;286(31):27706-17. doi: 10.1074/jbc.M110.213553. Epub 2011 Jun 2.


Systems biology: the next frontier for bioinformatics.

Likić VA, McConville MJ, Lithgow T, Bacic A.

Adv Bioinformatics. 2010:268925. doi: 10.1155/2010/268925. Epub 2011 Feb 9.


Using hidden markov models to discover new protein transport machines.

Likic VA, Dolezal P, Celik N, Dagley M, Lithgow T.

Methods Mol Biol. 2010;619:271-84. doi: 10.1007/978-1-60327-412-8_16.


The essentials of protein import in the degenerate mitochondrion of Entamoeba histolytica.

Dolezal P, Dagley MJ, Kono M, Wolynec P, Likić VA, Foo JH, Sedinová M, Tachezy J, Bachmann A, Bruchhaus I, Lithgow T.

PLoS Pathog. 2010 Mar 19;6(3):e1000812. doi: 10.1371/journal.ppat.1000812.


Central carbon metabolism of Leishmania parasites.

Saunders EC, DE Souza DP, Naderer T, Sernee MF, Ralton JE, Doyle MA, Macrae JI, Chambers JL, Heng J, Nahid A, Likic VA, McConville MJ.

Parasitology. 2010 Aug;137(9):1303-13. doi: 10.1017/S0031182010000077. Epub 2010 Feb 17. Review.


The reducible complexity of a mitochondrial molecular machine.

Clements A, Bursac D, Gatsos X, Perry AJ, Civciristov S, Celik N, Likic VA, Poggio S, Jacobs-Wagner C, Strugnell RA, Lithgow T.

Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15791-5. doi: 10.1073/pnas.0908264106. Epub 2009 Aug 26.


A comprehensive bioinformatics analysis of the Nudix superfamily in Arabidopsis thaliana.

Gunawardana D, Likic VA, Gayler KR.

Comp Funct Genomics. 2009:820381. doi: 10.1155/2009/820381. Epub 2009 Jul 2.


The protein import channel in the outer mitosomal membrane of Giardia intestinalis.

Dagley MJ, Dolezal P, Likic VA, Smid O, Purcell AW, Buchanan SK, Tachezy J, Lithgow T.

Mol Biol Evol. 2009 Sep;26(9):1941-7. doi: 10.1093/molbev/msp117. Epub 2009 Jun 16.


LeishCyc: a biochemical pathways database for Leishmania major.

Doyle MA, MacRae JI, De Souza DP, Saunders EC, McConville MJ, Likić VA.

BMC Syst Biol. 2009 Jun 5;3:57. doi: 10.1186/1752-0509-3-57.


Evidence of a reduced and modified mitochondrial protein import apparatus in microsporidian mitosomes.

Waller RF, Jabbour C, Chan NC, Celik N, Likic VA, Mulhern TD, Lithgow T.

Eukaryot Cell. 2009 Jan;8(1):19-26. doi: 10.1128/EC.00313-08. Epub 2008 Nov 21.


Protein secretion and outer membrane assembly in Alphaproteobacteria.

Gatsos X, Perry AJ, Anwari K, Dolezal P, Wolynec PP, Likić VA, Purcell AW, Buchanan SK, Lithgow T.

FEMS Microbiol Rev. 2008 Nov;32(6):995-1009. doi: 10.1111/j.1574-6976.2008.00130.x. Epub 2008 Aug 28. Review.


The transmembrane segment of Tom20 is recognized by Mim1 for docking to the mitochondrial TOM complex.

Hulett JM, Lueder F, Chan NC, Perry AJ, Wolynec P, Likić VA, Gooley PR, Lithgow T.

J Mol Biol. 2008 Feb 22;376(3):694-704. doi: 10.1016/j.jmb.2007.12.021. Epub 2007 Dec 15.


A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments.

Robinson MD, De Souza DP, Keen WW, Saunders EC, McConville MJ, Speed TP, Likić VA.

BMC Bioinformatics. 2007 Oct 29;8:419.

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