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Results: 1 to 20 of 34

1.

A platform independent RNA-Seq protocol for the detection of transcriptome complexity.

Calabrese C, Mangiulli M, Manzari C, Paluscio AM, Caratozzolo MF, Marzano F, Kurelac I, D'Erchia AM, D'Elia D, Licciulli F, Liuni S, Picardi E, Attimonelli M, Gasparre G, Porcelli AM, Pesole G, Sbisà E, Tullo A.

BMC Genomics. 2013 Dec 5;14:855. doi: 10.1186/1471-2164-14-855.

2.

Reference databases for taxonomic assignment in metagenomics.

Santamaria M, Fosso B, Consiglio A, De Caro G, Grillo G, Licciulli F, Liuni S, Marzano M, Alonso-Alemany D, Valiente G, Pesole G.

Brief Bioinform. 2012 Nov;13(6):682-95. doi: 10.1093/bib/bbs036. Epub 2012 Jul 10. Review.

3.

GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity Database.

Pannarale P, Catalano D, De Caro G, Grillo G, Leo P, Pappadà G, Rubino F, Scioscia G, Licciulli F.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S4. doi: 10.1186/1471-2105-13-S4-S4.

4.

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments.

Consiglio A, Carella M, De Caro G, Delle Foglie G, Giovannelli C, Grillo G, Ianigro M, Licciulli F, Palumbo O, Piepoli A, Ranieri E, Liuni S.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S21. doi: 10.1186/1471-2105-13-S4-S21.

5.

PlantPIs--an interactive web resource on plant protease inhibitors.

Consiglio A, Grillo G, Licciulli F, Ceci LR, Liuni S, Losito N, Volpicella M, Gallerani R, De Leo F.

Curr Protein Pept Sci. 2011 Aug;12(5):448-54. Review.

PMID:
21418024
6.

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.

Martelli PL, D'Antonio M, Bonizzoni P, Castrignanò T, D'Erchia AM, D'Onorio De Meo P, Fariselli P, Finelli M, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Rizzi R, Rossi I, Valletti A, Zauli A, Zambelli F, Casadio R, Pesole G.

Nucleic Acids Res. 2011 Jan;39(Database issue):D80-5. doi: 10.1093/nar/gkq1073. Epub 2010 Nov 4.

7.

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.

Grillo G, Turi A, Licciulli F, Mignone F, Liuni S, Banfi S, Gennarino VA, Horner DS, Pavesi G, Picardi E, Pesole G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D75-80. doi: 10.1093/nar/gkp902. Epub 2009 Oct 30.

8.

ASPicDB: a database resource for alternative splicing analysis.

Castrignanò T, D'Antonio M, Anselmo A, Carrabino D, D'Onorio De Meo A, D'Erchia AM, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Riva A, Rizzi R, Bonizzoni P, Pesole G.

Bioinformatics. 2008 May 15;24(10):1300-4. doi: 10.1093/bioinformatics/btn113. Epub 2008 Apr 3.

9.

Gene analogue finder: a GRID solution for finding functionally analogous gene products.

Tulipano A, Donvito G, Licciulli F, Maggi G, Gisel A.

BMC Bioinformatics. 2007 Sep 3;8:329.

10.

Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data.

Maglietta R, Piepoli A, Catalano D, Licciulli F, Carella M, Liuni S, Pesole G, Perri F, Ancona N.

Bioinformatics. 2007 Aug 15;23(16):2063-72. Epub 2007 May 31.

11.

p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.

Sbisà E, Catalano D, Grillo G, Licciulli F, Turi A, Liuni S, Pesole G, De Grassi A, Caratozzolo MF, D'Erchia AM, Navarro B, Tullo A, Saccone C, Gisel A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S20.

12.

The MitoDrome database annotates and compares the OXPHOS nuclear genes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae.

D'Elia D, Catalano D, Licciulli F, Turi A, Tripoli G, Porcelli D, Saccone C, Caggese C.

Mitochondrion. 2006 Oct;6(5):252-7. Epub 2006 Jul 21.

PMID:
16982216
13.

MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa.

Catalano D, Licciulli F, Turi A, Grillo G, Saccone C, D'Elia D.

BMC Bioinformatics. 2006 Jan 24;7:36.

14.

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.

Mignone F, Grillo G, Licciulli F, Iacono M, Liuni S, Kersey PJ, Duarte J, Saccone C, Pesole G.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D141-6.

15.

PatSearch: A program for the detection of patterns and structural motifs in nucleotide sequences.

Grillo G, Licciulli F, Liuni S, Sbisà E, Pesole G.

Nucleic Acids Res. 2003 Jul 1;31(13):3608-12.

16.

PLMItRNA, a database on the heterogeneous genetic origin of mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes.

Rainaldi G, Volpicella M, Licciulli F, Liuni S, Gallerani R, Ceci LR.

Nucleic Acids Res. 2003 Jan 1;31(1):436-8.

17.

MitoDrome: a database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion.

Sardiello M, Licciulli F, Catalano D, Attimonelli M, Caggese C.

Nucleic Acids Res. 2003 Jan 1;31(1):322-4.

18.

PLANT-PIs: a database for plant protease inhibitors and their genes.

De Leo F, Volpicella M, Licciulli F, Liuni S, Gallerani R, Ceci LR.

Nucleic Acids Res. 2002 Jan 1;30(1):347-8.

19.

UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.

Pesole G, Liuni S, Grillo G, Licciulli F, Mignone F, Gissi C, Saccone C.

Nucleic Acids Res. 2002 Jan 1;30(1):335-40.

20.

Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences.

Lanave C, Licciulli F, De Robertis M, Marolla A, Attimonelli M.

Nucleic Acids Res. 2002 Jan 1;30(1):174-5.

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