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Items: 1 to 20 of 185

1.

Computational Modeling, Formal Analysis, and Tools for Systems Biology.

Bartocci E, Lió P.

PLoS Comput Biol. 2016 Jan 21;12(1):e1004591. doi: 10.1371/journal.pcbi.1004591. eCollection 2016 Jan. Review.

2.

Hierarchical block matrices as efficient representations of chromosome topologies and their application for 3C data integration.

Shavit Y, Walker BJ, Lio' P.

Bioinformatics. 2015 Dec 17. pii: btv736. [Epub ahead of print]

PMID:
26685310
3.

Network regularised Cox regression and multiplex network models to predict disease comorbidities and survival of cancer.

Xu H, Moni MA, Liò P.

Comput Biol Chem. 2015 Dec;59 Pt B:15-31. doi: 10.1016/j.compbiolchem.2015.08.010. Epub 2015 Oct 19.

PMID:
26611766
4.

Advances in Artificial Life: Synthesis and Simulation of Living Systems: Editorial.

Liò P, Miglino O, Nicosia G, Nolfi S, Pavone M.

Artif Life. 2015 Fall;21(4):395-7. doi: 10.1162/ARTL_e_00189. Epub 2015 Nov 6. No abstract available.

PMID:
26545158
5.

Quantifying the Role of Homophily in Human Cooperation Using Multiplex Evolutionary Game Theory.

Di Stefano A, Scatà M, La Corte A, Liò P, Catania E, Guardo E, Pagano S.

PLoS One. 2015 Oct 23;10(10):e0140646. doi: 10.1371/journal.pone.0140646. eCollection 2015.

6.

Predictive analytics of environmental adaptability in multi-omic network models.

Angione C, Lió P.

Sci Rep. 2015 Oct 20;5:15147. doi: 10.1038/srep15147.

7.

How computer science can help in understanding the 3D genome architecture.

Shavit Y, Merelli I, Milanesi L, Lio' P.

Brief Bioinform. 2015 Oct 3. pii: bbv085. [Epub ahead of print]

PMID:
26433013
8.

DAPPER: a data-mining resource for protein-protein interactions.

Haider S, Lipinszki Z, Przewloka MR, Ladak Y, D'Avino PP, Kimata Y, Lio' P, Glover DM.

BioData Min. 2015 Sep 24;8:30. doi: 10.1186/s13040-015-0063-3. eCollection 2015.

9.

Multi-Target Analysis and Design of Mitochondrial Metabolism.

Angione C, Costanza J, Carapezza G, Lió P, Nicosia G.

PLoS One. 2015 Sep 16;10(9):e0133825. doi: 10.1371/journal.pone.0133825. eCollection 2015.

10.

Systems medicine of inflammaging.

Castellani GC, Menichetti G, Garagnani P, Giulia Bacalini M, Pirazzini C, Franceschi C, Collino S, Sala C, Remondini D, Giampieri E, Mosca E, Bersanelli M, Vitali S, Valle IF, Liò P, Milanesi L.

Brief Bioinform. 2015 Aug 24. pii: bbv062. [Epub ahead of print]

PMID:
26307062
11.

Alternative, Complementary, and Forgotten Remedies for Atopic Dermatitis.

Goddard AL, Lio PA.

Evid Based Complement Alternat Med. 2015;2015:676897. doi: 10.1155/2015/676897. Epub 2015 Jul 15. Review.

12.

Bayesian Melding Approach to Estimate the Reproduction Number for Tuberculosis Transmission in Indian States and Union Territories.

Narula P, Azad S, Lio P.

Asia Pac J Public Health. 2015 Oct;27(7):723-32. doi: 10.1177/1010539515595068. Epub 2015 Jul 16.

PMID:
26182939
13.

How to build personalized multi-omics comorbidity profiles.

Moni MA, Liò P.

Front Cell Dev Biol. 2015 Jun 24;3:28. doi: 10.3389/fcell.2015.00028. eCollection 2015.

14.

Modelling circulating tumour cells for personalised survival prediction in metastatic breast cancer.

Ascolani G, Occhipinti A, Liò P.

PLoS Comput Biol. 2015 May 15;11(5):e1004199. doi: 10.1371/journal.pcbi.1004199. eCollection 2015 May.

15.

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Di Genova A, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A.

Nucleic Acids Res. 2015 Jul 1;43(W1):W589-98. doi: 10.1093/nar/gkv350. Epub 2015 Apr 20.

16.

A Hybrid of Metabolic Flux Analysis and Bayesian Factor Modeling for Multiomic Temporal Pathway Activation.

Angione C, Pratanwanich N, Lió P.

ACS Synth Biol. 2015 Aug 21;4(8):880-9. doi: 10.1021/sb5003407. Epub 2015 Apr 27.

PMID:
25856685
17.

Comparison of Dermatology and Allergy Guidelines for Atopic Dermatitis Management.

Mohan GC, Lio PA.

JAMA Dermatol. 2015 Sep;151(9):1009-13. doi: 10.1001/jamadermatol.2015.0250. Review.

PMID:
25853940
18.

Identification of cutaneous warts: cryotherapy-induced acetowhitelike epithelium.

Nanda S, Lio PA.

Cutis. 2015 Mar;95(3):E3-4. No abstract available.

PMID:
25844793
19.

MeDuSa: a multi-draft based scaffolder.

Bosi E, Donati B, Galardini M, Brunetti S, Sagot MF, Lió P, Crescenzi P, Fani R, Fondi M.

Bioinformatics. 2015 Aug 1;31(15):2443-51. doi: 10.1093/bioinformatics/btv171. Epub 2015 Mar 25.

PMID:
25810435
20.

Analyzing seasonality of tuberculosis across Indian states and union territories.

Narula P, Sihota P, Azad S, Lio P.

J Epidemiol Glob Health. 2015 Dec;5(4):337-46. doi: 10.1016/j.jegh.2015.02.004. Epub 2015 Mar 18.

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