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Results: 1 to 20 of 25

1.

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale.

Liu JK, O Brien EJ, Lerman JA, Zengler K, Palsson BO, Feist AM.

BMC Syst Biol. 2014 Sep 18;8(1):110. [Epub ahead of print]

PMID:
25227965
[PubMed - as supplied by publisher]
Free Article
2.

Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments.

Monk JM, Charusanti P, Aziz RK, Lerman JA, Premyodhin N, Orth JD, Feist AM, Palsson BØ.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20338-43. doi: 10.1073/pnas.1307797110. Epub 2013 Nov 25.

PMID:
24277855
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction.

O'Brien EJ, Lerman JA, Chang RL, Hyduke DR, Palsson BØ.

Mol Syst Biol. 2013 Oct 1;9:693. doi: 10.1038/msb.2013.52.

PMID:
24084808
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

COBRApy: COnstraints-Based Reconstruction and Analysis for Python.

Ebrahim A, Lerman JA, Palsson BO, Hyduke DR.

BMC Syst Biol. 2013 Aug 8;7:74. doi: 10.1186/1752-0509-7-74.

PMID:
23927696
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The genome organization of Thermotoga maritima reflects its lifestyle.

Latif H, Lerman JA, Portnoy VA, Tarasova Y, Nagarajan H, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Lee DH, Qiu Y, Zengler K.

PLoS Genet. 2013 Apr;9(4):e1003485. doi: 10.1371/journal.pgen.1003485. Epub 2013 Apr 25.

PMID:
23637642
[PubMed - in process]
Free PMC Article
6.

Reconciling a Salmonella enterica metabolic model with experimental data confirms that overexpression of the glyoxylate shunt can rescue a lethal ppc deletion mutant.

Fong NL, Lerman JA, Lam I, Palsson BO, Charusanti P.

FEMS Microbiol Lett. 2013 May;342(1):62-9. doi: 10.1111/1574-6968.12109. Epub 2013 Mar 15.

PMID:
23432746
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Network context and selection in the evolution to enzyme specificity.

Nam H, Lewis NE, Lerman JA, Lee DH, Chang RL, Kim D, Palsson BO.

Science. 2012 Aug 31;337(6098):1101-4. doi: 10.1126/science.1216861.

PMID:
22936779
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence.

Ho Sui SJ, Lo R, Fernandes AR, Caulfield MD, Lerman JA, Xie L, Bourne PE, Baillie DL, Brinkman FS.

Int J Antimicrob Agents. 2012 Sep;40(3):246-51. doi: 10.1016/j.ijantimicag.2012.05.009. Epub 2012 Jul 20.

PMID:
22819149
[PubMed - indexed for MEDLINE]
Free Article
9.

In silico method for modelling metabolism and gene product expression at genome scale.

Lerman JA, Hyduke DR, Latif H, Portnoy VA, Lewis NE, Orth JD, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Zengler K, Palsson BO.

Nat Commun. 2012 Jul 3;3:929. doi: 10.1038/ncomms1928.

PMID:
22760628
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92.

Charusanti P, Chauhan S, McAteer K, Lerman JA, Hyduke DR, Motin VL, Ansong C, Adkins JN, Palsson BO.

BMC Syst Biol. 2011 Oct 13;5:163. doi: 10.1186/1752-0509-5-163.

PMID:
21995956
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.

Orth JD, Conrad TM, Na J, Lerman JA, Nam H, Feist AM, Palsson BØ.

Mol Syst Biol. 2011 Oct 11;7:535. doi: 10.1038/msb.2011.65.

PMID:
21988831
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models.

Lewis NE, Hixson KK, Conrad TM, Lerman JA, Charusanti P, Polpitiya AD, Adkins JN, Schramm G, Purvine SO, Lopez-Ferrer D, Weitz KK, Eils R, König R, Smith RD, Palsson BØ.

Mol Syst Biol. 2010 Jul;6:390. doi: 10.1038/msb.2010.47.

PMID:
20664636
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Reliability of radiographic parameters in neuromuscular scoliosis.

Gupta MC, Wijesekera S, Sossan A, Martin L, Vogel LC, Boakes JL, Lerman JA, McDonald CM, Betz RR.

Spine (Phila Pa 1976). 2007 Mar 15;32(6):691-5.

PMID:
17413476
[PubMed - indexed for MEDLINE]
14.

The Pediatric Outcomes Data Collection Instrument (PODCI) and functional assessment of patients with unilateral upper extremity deficiencies.

Lerman JA, Sullivan E, Barnes DA, Haynes RJ.

J Pediatr Orthop. 2005 May-Jun;25(3):405-7.

PMID:
15832164
[PubMed - indexed for MEDLINE]
15.

Assessment of children with brachial plexus birth palsy using the Pediatric Outcomes Data Collection Instrument.

Huffman GR, Bagley AM, James MA, Lerman JA, Rab G.

J Pediatr Orthop. 2005 May-Jun;25(3):400-4.

PMID:
15832163
[PubMed - indexed for MEDLINE]
16.

The Pediatric Outcomes Data Collection Instrument (PODCI) and functional assessment in patients with adolescent or juvenile idiopathic scoliosis and congenital scoliosis or kyphosis.

Lerman JA, Sullivan E, Haynes RJ.

Spine (Phila Pa 1976). 2002 Sep 15;27(18):2052-7; discussion 2057-8.

PMID:
12634568
[PubMed - indexed for MEDLINE]
17.

Spinal arthrodesis for scoliosis in Down syndrome.

Lerman JA, Emans JB, Hall JE, Karlin LI.

J Pediatr Orthop. 2003 Mar-Apr;23(2):159-61.

PMID:
12604943
[PubMed - indexed for MEDLINE]
18.

Open versus closed halo rings: comparison of fixation strengths.

Lerman JA, Haynes RJ.

Spine (Phila Pa 1976). 2001 Oct 1;26(19):2102-4.

PMID:
11698886
[PubMed - indexed for MEDLINE]
19.

Penetration of cranial inner table with Gardner-Wells tongs.

Lerman JA, Dickman CA, Haynes RJ.

J Spinal Disord. 2001 Jun;14(3):211-3.

PMID:
11389370
[PubMed - indexed for MEDLINE]
20.

Early failure of Pavlik harness treatment for developmental hip dysplasia: clinical and ultrasound predictors.

Lerman JA, Emans JB, Millis MB, Share J, Zurakowski D, Kasser JR.

J Pediatr Orthop. 2001 May-Jun;21(3):348-53.

PMID:
11371819
[PubMed - indexed for MEDLINE]

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