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Results: 1 to 20 of 58

1.

The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria.

Mallmann J, Heckmann D, Bräutigam A, Lercher MJ, Weber AP, Westhoff P, Gowik U.

Elife (Cambridge). 2014 Jun 16:e02478. doi: 10.7554/eLife.02478. [Epub ahead of print]

PMID:
24935935
[PubMed - as supplied by publisher]
Free PMC Article
2.

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R.

Pfeifer B, Wittelsbürger U, Ramos-Onsins SE, Lercher MJ.

Mol Biol Evol. 2014 Jul;31(7):1929-36. doi: 10.1093/molbev/msu136. Epub 2014 Apr 16.

PMID:
24739305
[PubMed - in process]
Free PMC Article
3.

Mitochondrial 2-hydroxyglutarate metabolism.

Engqvist MK, Eßer C, Maier A, Lercher MJ, Maurino VG.

Mitochondrion. 2014 Feb 21. pii: S1567-7249(14)00023-3. doi: 10.1016/j.mito.2014.02.009. [Epub ahead of print]

PMID:
24561575
[PubMed - as supplied by publisher]
4.

Plant and animal glycolate oxidases have a common eukaryotic ancestor and convergently duplicated to evolve long-chain 2-hydroxy acid oxidases.

Esser C, Kuhn A, Groth G, Lercher MJ, Maurino VG.

Mol Biol Evol. 2014 May;31(5):1089-101. doi: 10.1093/molbev/msu041. Epub 2014 Jan 9.

PMID:
24408912
[PubMed - in process]
5.

Horizontal gene acquisitions by eukaryotes as drivers of adaptive evolution.

Schönknecht G, Weber AP, Lercher MJ.

Bioessays. 2014 Jan;36(1):9-20. doi: 10.1002/bies.201300095. Epub 2013 Nov 13.

PMID:
24323918
[PubMed - indexed for MEDLINE]
6.

Sybil--efficient constraint-based modelling in R.

Gelius-Dietrich G, Desouki AA, Fritzemeier CJ, Lercher MJ.

BMC Syst Biol. 2013 Nov 13;7:125. doi: 10.1186/1752-0509-7-125.

PMID:
24224957
[PubMed - in process]
Free PMC Article
7.

Predicting C4 photosynthesis evolution: modular, individually adaptive steps on a Mount Fuji fitness landscape.

Heckmann D, Schulze S, Denton A, Gowik U, Westhoff P, Weber AP, Lercher MJ.

Cell. 2013 Jun 20;153(7):1579-88. doi: 10.1016/j.cell.2013.04.058.

PMID:
23791184
[PubMed - indexed for MEDLINE]
Free Article
8.

Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote.

Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, Oesterhelt C, Lercher MJ, Weber AP.

Science. 2013 Mar 8;339(6124):1207-10. doi: 10.1126/science.1231707.

PMID:
23471408
[PubMed - indexed for MEDLINE]
Free Article
9.

EvolView, an online tool for visualizing, annotating and managing phylogenetic trees.

Zhang H, Gao S, Lercher MJ, Hu S, Chen WH.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W569-72. doi: 10.1093/nar/gks576. Epub 2012 Jun 13.

PMID:
22695796
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

TreeSnatcher plus: capturing phylogenetic trees from images.

Laubach T, von Haeseler A, Lercher MJ.

BMC Bioinformatics. 2012 May 24;13:110. doi: 10.1186/1471-2105-13-110.

PMID:
22624611
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age.

Chen WH, Trachana K, Lercher MJ, Bork P.

Mol Biol Evol. 2012 Jul;29(7):1703-6. doi: 10.1093/molbev/mss014. Epub 2012 Jan 19.

PMID:
22319151
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Horizontal gene transfers as metagenomic gene duplications.

Grassi L, Caselle M, Lercher MJ, Lagomarsino MC.

Mol Biosyst. 2012 Mar;8(3):790-5. doi: 10.1039/c2mb05330f. Epub 2012 Jan 4.

PMID:
22218456
[PubMed - indexed for MEDLINE]
13.

OGEE: an online gene essentiality database.

Chen WH, Minguez P, Lercher MJ, Bork P.

Nucleic Acids Res. 2012 Jan;40(Database issue):D901-6. doi: 10.1093/nar/gkr986. Epub 2011 Nov 10.

PMID:
22075992
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Coexpression of linked gene pairs persists long after their separation.

Wang GZ, Chen WH, Lercher MJ.

Genome Biol Evol. 2011;3:565-70. doi: 10.1093/gbe/evr049. Epub 2011 Jul 6.

PMID:
21737396
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Minimal regulatory spaces in yeast genomes.

Chen WH, Wei W, Lercher MJ.

BMC Genomics. 2011 Jun 16;12:320. doi: 10.1186/1471-2164-12-320.

PMID:
21679449
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

An integrated approach to characterize genetic interaction networks in yeast metabolism.

Szappanos B, Kovács K, Szamecz B, Honti F, Costanzo M, Baryshnikova A, Gelius-Dietrich G, Lercher MJ, Jelasity M, Myers CL, Andrews BJ, Boone C, Oliver SG, Pál C, Papp B.

Nat Genet. 2011 May 29;43(7):656-62. doi: 10.1038/ng.846.

PMID:
21623372
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The effects of network neighbours on protein evolution.

Wang GZ, Lercher MJ.

PLoS One. 2011 Apr 12;6(4):e18288. doi: 10.1371/journal.pone.0018288.

PMID:
21532755
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A gene's ability to buffer variation is predicted by its fitness contribution and genetic interactions.

Wang GZ, Liu J, Wang W, Zhang HY, Lercher MJ.

PLoS One. 2011 Mar 2;6(3):e17650. doi: 10.1371/journal.pone.0017650.

PMID:
21407817
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Transcriptional coupling of neighboring genes and gene expression noise: evidence that gene orientation and noncoding transcripts are modulators of noise.

Wang GZ, Lercher MJ, Hurst LD.

Genome Biol Evol. 2011;3:320-31. doi: 10.1093/gbe/evr025. Epub 2011 Mar 14.

PMID:
21402863
[PubMed - indexed for MEDLINE]
Free Article
20.

Human functional genetic studies are biased against the medically most relevant primate-specific genes.

Hao L, Ge X, Wan H, Hu S, Lercher MJ, Yu J, Chen WH.

BMC Evol Biol. 2010 Oct 20;10:316. doi: 10.1186/1471-2148-10-316.

PMID:
20961448
[PubMed - indexed for MEDLINE]
Free PMC Article

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