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Genetically integrated traits and rugged adaptive landscapes in digital organisms.

Ostrowski EA, Ofria C, Lenski RE.

BMC Evol Biol. 2015 May 12;15:83. doi: 10.1186/s12862-015-0361-x.


A Comparison of Methods to Measure Fitness in Escherichia coli.

Wiser MJ, Lenski RE.

PLoS One. 2015 May 11;10(5):e0126210. doi: 10.1371/journal.pone.0126210. eCollection 2015.


Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli.

Maddamsetti R, Lenski RE, Barrick JE.

Genetics. 2015 Apr 24. pii: genetics.115.176677. [Epub ahead of print]


Modeling and quantifying frequency-dependent fitness in microbial populations with cross-feeding interactions.

Ribeck N, Lenski RE.

Evolution. 2015 May;69(5):1313-20. doi: 10.1111/evo.12645. Epub 2015 Apr 29.


Coevolution drives the emergence of complex traits and promotes evolvability.

Zaman L, Meyer JR, Devangam S, Bryson DM, Lenski RE, Ofria C.

PLoS Biol. 2014 Dec 16;12(12):e1002023. doi: 10.1371/journal.pbio.1002023. eCollection 2014 Dec.


Does evolutionary theory need a rethink?

Laland K, Uller T, Feldman M, Sterelny K, Müller GB, Moczek A, Jablonka E, Odling-Smee J, Wray GA, Hoekstra HE, Futuyma DJ, Lenski RE, Mackay TF, Schluter D, Strassmann JE.

Nature. 2014 Oct 9;514(7521):161-4. doi: 10.1038/514161a. No abstract available.


Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli.

Raeside C, Gaffé J, Deatherage DE, Tenaillon O, Briska AM, Ptashkin RN, Cruveiller S, Médigue C, Lenski RE, Barrick JE, Schneider D.

MBio. 2014 Sep 9;5(5):e01377-14. doi: 10.1128/mBio.01377-14.


Coexistence of evolving bacteria stabilized by a shared black queen function.

Morris JJ, Papoulis SE, Lenski RE.

Evolution. 2014 Oct;68(10):2960-71. doi: 10.1111/evo.12485. Epub 2014 Aug 1.


Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli.

Plucain J, Hindré T, Le Gac M, Tenaillon O, Cruveiller S, Médigue C, Leiby N, Harcombe WR, Marx CJ, Lenski RE, Schneider D.

Science. 2014 Mar 21;343(6177):1366-9. doi: 10.1126/science.1248688. Epub 2014 Mar 6.


Long-term dynamics of adaptation in asexual populations.

Wiser MJ, Ribeck N, Lenski RE.

Science. 2013 Dec 13;342(6164):1364-7. doi: 10.1126/science.1243357. Epub 2013 Nov 14.


Genome dynamics during experimental evolution.

Barrick JE, Lenski RE.

Nat Rev Genet. 2013 Dec;14(12):827-39. doi: 10.1038/nrg3564. Epub 2013 Oct 29. Review.


Experiments on the role of deleterious mutations as stepping stones in adaptive evolution.

Covert AW 3rd, Lenski RE, Wilke CO, Ofria C.

Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):E3171-8. doi: 10.1073/pnas.1313424110. Epub 2013 Aug 5.


Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load.

Wielgoss S, Barrick JE, Tenaillon O, Wiser MJ, Dittmar WJ, Cruveiller S, Chane-Woon-Ming B, Médigue C, Lenski RE, Schneider D.

Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):222-7. doi: 10.1073/pnas.1219574110. Epub 2012 Dec 17.


Genomic analysis of a key innovation in an experimental Escherichia coli population.

Blount ZD, Barrick JE, Davidson CJ, Lenski RE.

Nature. 2012 Sep 27;489(7417):513-8. doi: 10.1038/nature11514. Epub 2012 Sep 19.


Ontogeny tends to recapitulate phylogeny in digital organisms.

Clune J, Pennock RT, Ofria C, Lenski RE.

Am Nat. 2012 Sep;180(3):E54-63. doi: 10.1086/666984. Epub 2012 Jul 16.


Experimental evolution.

Kawecki TJ, Lenski RE, Ebert D, Hollis B, Olivieri I, Whitlock MC.

Trends Ecol Evol. 2012 Oct;27(10):547-60. doi: 10.1016/j.tree.2012.06.001. Epub 2012 Jul 21. Review.


Ecological and evolutionary dynamics of coexisting lineages during a long-term experiment with Escherichia coli.

Le Gac M, Plucain J, Hindré T, Lenski RE, Schneider D.

Proc Natl Acad Sci U S A. 2012 Jun 12;109(24):9487-92. doi: 10.1073/pnas.1207091109. Epub 2012 May 29.


The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss.

Morris JJ, Lenski RE, Zinser ER.

MBio. 2012 May 2;3(2). pii: e00036-12. doi: 10.1128/mBio.00036-12. Print 2012.


Repeatability and contingency in the evolution of a key innovation in phage lambda.

Meyer JR, Dobias DT, Weitz JS, Barrick JE, Quick RT, Lenski RE.

Science. 2012 Jan 27;335(6067):428-32. doi: 10.1126/science.1214449.


Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli.

Wielgoss S, Barrick JE, Tenaillon O, Cruveiller S, Chane-Woon-Ming B, Médigue C, Lenski RE, Schneider D.

G3 (Bethesda). 2011 Aug 1;1(3):183-186.

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