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Results: 1 to 20 of 34

1.

Corrigendum: Differential expression analysis of RNA-seq data at single-base resolution.

Frazee AC, Hansen KD, Leek JT, Sabunciyan S, Irizarry RA.

Biostatistics. 2014 Jul;15(3):584-5. doi: 10.1093/biostatistics/kxu022. No abstract available.

PMID:
24936601
[PubMed - in process]
Free PMC Article
2.

Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction.

Parker HS, Leek JT, Favorov AV, Considine M, Xia X, Chavan S, Chung CH, Elana JF.

Bioinformatics. 2014 Jun 6. pii: btu375. [Epub ahead of print]

PMID:
24907368
[PubMed - as supplied by publisher]
3.

Inflammatory Molecular Signature Associated With Infectious Agents in Psychosis.

Hayes LN, Severance EG, Leek JT, Gressitt KL, Rohleder C, Coughlin JM, Leweke FM, Yolken RH, Sawa A.

Schizophr Bull. 2014 Apr 17. [Epub ahead of print]

PMID:
24743863
[PubMed - as supplied by publisher]
4.

Differential expression analysis of RNA-seq data at single-base resolution.

Frazee AC, Sabunciyan S, Hansen KD, Irizarry RA, Leek JT.

Biostatistics. 2014 Jul;15(3):413-26. doi: 10.1093/biostatistics/kxt053. Epub 2014 Jan 6.

PMID:
24398039
[PubMed - in process]
Free PMC Article
5.

Gene set bagging for estimating the probability a statistically significant result will replicate.

Jaffe AE, Storey JD, Ji H, Leek JT.

BMC Bioinformatics. 2013 Dec 12;14:360. doi: 10.1186/1471-2105-14-360.

PMID:
24330332
[PubMed - indexed for MEDLINE]
Free Article
6.

An estimate of the science-wise false discovery rate and application to the top medical literature.

Jager LR, Leek JT.

Biostatistics. 2014 Jan;15(1):1-12. doi: 10.1093/biostatistics/kxt007. Epub 2013 Sep 25.

PMID:
24068246
[PubMed - in process]
7.

A decision-theory approach to interpretable set analysis for high-dimensional data.

Boca SM, Bravo HC, Caffo B, Leek JT, Parmigiani G.

Biometrics. 2013 Sep;69(3):614-23. doi: 10.1111/biom.12060. Epub 2013 Aug 2.

PMID:
23909925
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A simple and reproducible breast cancer prognostic test.

Marchionni L, Afsari B, Geman D, Leek JT.

BMC Genomics. 2013 May 17;14:336. doi: 10.1186/1471-2164-14-336.

PMID:
23682826
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Sequestration: inadvertently killing biomedical research to score political points.

Leek JT, Salzberg SL.

Genome Biol. 2013 Mar 27;14(3):109. [Epub ahead of print] No abstract available.

PMID:
23651812
[PubMed - as supplied by publisher]
Free PMC Article
10.

SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies.

Pirooznia M, Seifuddin F, Goes FS, Leek JT, Zandi PP.

Source Code Biol Med. 2013 Mar 11;8(1):8. doi: 10.1186/1751-0473-8-8.

PMID:
23497726
[PubMed]
Free PMC Article
11.

Gene expression anti-profiles as a basis for accurate universal cancer signatures.

Bravo HC, Pihur V, McCall M, Irizarry RA, Leek JT.

BMC Bioinformatics. 2012 Oct 22;13:272. doi: 10.1186/1471-2105-13-272.

PMID:
23088656
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A statistical approach to selecting and confirming validation targets in -omics experiments.

Leek JT, Taub MA, Rasgon JL.

BMC Bioinformatics. 2012 Jun 27;13:150.

PMID:
22738145
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The practical effect of batch on genomic prediction.

Parker HS, Leek JT.

Stat Appl Genet Mol Biol. 2012;11(3):Article 10.

PMID:
22611599
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Personalized medicine: Keep a way open for tailored treatments.

Leek JT, Peng RD, Anderson RR.

Nature. 2012 Apr 18;484(7394):318. doi: 10.1038/484318a. No abstract available.

PMID:
22517151
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.

Jaffe AE, Murakami P, Lee H, Leek JT, Fallin MD, Feinberg AP, Irizarry RA.

Int J Epidemiol. 2012 Feb;41(1):200-9. doi: 10.1093/ije/dyr238.

PMID:
22422453
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.

Leek JT, Johnson WE, Parker HS, Jaffe AE, Storey JD.

Bioinformatics. 2012 Mar 15;28(6):882-3. doi: 10.1093/bioinformatics/bts034. Epub 2012 Jan 17.

PMID:
22257669
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Cooperation between referees and authors increases peer review accuracy.

Leek JT, Taub MA, Pineda FJ.

PLoS One. 2011;6(11):e26895. doi: 10.1371/journal.pone.0026895. Epub 2011 Nov 9.

PMID:
22096506
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets.

Frazee AC, Langmead B, Leek JT.

BMC Bioinformatics. 2011 Nov 16;12:449. doi: 10.1186/1471-2105-12-449.

PMID:
22087737
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Temporal dynamics and genetic control of transcription in the human prefrontal cortex.

Colantuoni C, Lipska BK, Ye T, Hyde TM, Tao R, Leek JT, Colantuoni EA, Elkahloun AG, Herman MM, Weinberger DR, Kleinman JE.

Nature. 2011 Oct 26;478(7370):519-23. doi: 10.1038/nature10524.

PMID:
22031444
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Dissecting inflammatory complications in critically injured patients by within-patient gene expression changes: a longitudinal clinical genomics study.

Desai KH, Tan CS, Leek JT, Maier RV, Tompkins RG, Storey JD; Inflammation and the Host Response to Injury Large-Scale Collaborative Research Program.

PLoS Med. 2011 Sep;8(9):e1001093. doi: 10.1371/journal.pmed.1001093. Epub 2011 Sep 13.

PMID:
21931541
[PubMed - indexed for MEDLINE]
Free PMC Article

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