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Items: 1 to 20 of 98

1.

Retrotransposon Proliferation Coincident with the Evolution of Dioecy in Asparagus.

Harkess A, Mercati F, Abbate L, McKain M, Pires JC, Sala T, Sunseri F, Falavigna A, Leebens-Mack J.

G3 (Bethesda). 2016 Jun 24. pii: g3.116.030239. doi: 10.1534/g3.116.030239. [Epub ahead of print]

2.

Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology.

Lane TS, Rempe CS, Davitt J, Staton ME, Peng Y, Soltis DE, Melkonian M, Deyholos M, Leebens-Mack JH, Chase M, Rothfels CJ, Stevenson D, Graham SW, Yu J, Liu T, Pires JC, Edger PP, Zhang Y, Xie Y, Zhu Y, Carpenter E, Wong GK, Stewart CN Jr.

BMC Biotechnol. 2016 May 31;16(1):47. doi: 10.1186/s12896-016-0277-6.

3.

Data supporting the nuclear phylogenomics of the palm subfamily Arecoideae (Arecaceae).

Comer JR, Zomlefer WB, Barrett CF, Stevenson DW, Heyduk K, Leebens-Mack JH.

Data Brief. 2016 Mar 2;7:532-6. doi: 10.1016/j.dib.2016.02.063. eCollection 2016 Jun.

4.

A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales.

McKain MR, Tang H, McNeal JR, Ayyampalayam S, Davis JI, dePamphilis CW, Givnish TJ, Pires JC, Stevenson DW, Leebens-Mack JH.

Genome Biol Evol. 2016 Apr 21;8(4):1150-64. doi: 10.1093/gbe/evw060.

5.

Plant Comparative and Functional Genomics.

Yang X, Leebens-Mack J, Chen F, Yin Y.

Int J Genomics. 2015;2015:924369. doi: 10.1155/2015/924369. Epub 2015 Dec 31. No abstract available.

6.

Identification of genes differentially expressed during early interactions between the stem rot fungus (Sclerotium rolfsii) and peanut (Arachis hypogaea) cultivars with increasing disease resistance levels.

Jogi A, Kerry JW, Brenneman TB, Leebens-Mack JH, Gold SE.

Microbiol Res. 2016 Mar;184:1-12. doi: 10.1016/j.micres.2015.11.003. Epub 2015 Dec 17.

PMID:
26856448
7.

Nuclear phylogenomics of the palm subfamily Arecoideae (Arecaceae).

Comer JR, Zomlefer WB, Barrett CF, Stevenson DW, Heyduk K, Leebens-Mack JH.

Mol Phylogenet Evol. 2016 Apr;97:32-42. doi: 10.1016/j.ympev.2015.12.015. Epub 2015 Dec 31.

PMID:
26748268
8.

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome.

Honaas LA, Wafula EK, Wickett NJ, Der JP, Zhang Y, Edger PP, Altman NS, Pires JC, Leebens-Mack JH, dePamphilis CW.

PLoS One. 2016 Jan 5;11(1):e0146062. doi: 10.1371/journal.pone.0146062. eCollection 2016.

9.

Gas exchange and leaf anatomy of a C3-CAM hybrid, Yucca gloriosa (Asparagaceae).

Heyduk K, Burrell N, Lalani F, Leebens-Mack J.

J Exp Bot. 2016 Mar;67(5):1369-79. doi: 10.1093/jxb/erv536. Epub 2015 Dec 29.

10.

The pineapple genome and the evolution of CAM photosynthesis.

Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H, Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H, Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A, McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen LY, Shirley N, Lin YR, Liu LY, Hernandez AG, Wright CL, Bulone V, Tuskan GA, Heath K, Zee F, Moore PH, Sunkar R, Leebens-Mack JH, Mockler T, Bennetzen JL, Freeling M, Sankoff D, Paterson AH, Zhu X, Yang X, Smith JA, Cushman JC, Paull RE, Yu Q.

Nat Genet. 2015 Dec;47(12):1435-42. doi: 10.1038/ng.3435. Epub 2015 Nov 2.

11.

Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots.

Barrett CF, Baker WJ, Comer JR, Conran JG, Lahmeyer SC, Leebens-Mack JH, Li J, Lim GS, Mayfield-Jones DR, Perez L, Medina J, Pires JC, Santos C, Wm Stevenson D, Zomlefer WB, Davis JI.

New Phytol. 2016 Jan;209(2):855-70. doi: 10.1111/nph.13617. Epub 2015 Sep 9.

PMID:
26350789
12.

Orchid phylogenomics and multiple drivers of their extraordinary diversification.

Givnish TJ, Spalink D, Ames M, Lyon SP, Hunter SJ, Zuluaga A, Iles WJ, Clements MA, Arroyo MT, Leebens-Mack J, Endara L, Kriebel R, Neubig KM, Whitten WM, Williams NH, Cameron KM.

Proc Biol Sci. 2015 Sep 7;282(1814). doi: 10.1098/rspb.2015.1553.

PMID:
26311671
13.

Resolving relationships within the palm subfamily Arecoideae (Arecaceae) using plastid sequences derived from next-generation sequencing.

Comer JR, Zomlefer WB, Barrett CF, Davis JI, Stevenson DW, Heyduk K, Leebens-Mack JH.

Am J Bot. 2015 Jun;102(6):888-99. doi: 10.3732/ajb.1500057. Epub 2015 May 29.

14.

Evolution of Asparagus L. (Asparagaceae): Out-of-South-Africa and multiple origins of sexual dimorphism.

Norup MF, Petersen G, Burrows S, Bouchenak-Khelladi Y, Leebens-Mack J, Pires JC, Linder HP, Seberg O.

Mol Phylogenet Evol. 2015 Nov;92:25-44. doi: 10.1016/j.ympev.2015.06.002. Epub 2015 Jun 14.

PMID:
26079131
15.

Elucidating steroid alkaloid biosynthesis in Veratrum californicum: production of verazine in Sf9 cells.

Augustin MM, Ruzicka DR, Shukla AK, Augustin JM, Starks CM, O'Neil-Johnson M, McKain MR, Evans BS, Barrett MD, Smithson A, Wong GK, Deyholos MK, Edger PP, Pires JC, Leebens-Mack JH, Mann DA, Kutchan TM.

Plant J. 2015 Jun;82(6):991-1003. doi: 10.1111/tpj.12871.

16.

Sex-biased gene expression in dioecious garden asparagus (Asparagus officinalis).

Harkess A, Mercati F, Shan HY, Sunseri F, Falavigna A, Leebens-Mack J.

New Phytol. 2015 Aug;207(3):883-92. doi: 10.1111/nph.13389. Epub 2015 Mar 27.

PMID:
25817071
17.

Data access for the 1,000 Plants (1KP) project.

Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, Roure B, Philippe H, Ruhfel BR, Miles NW, Graham SW, Mathews S, Surek B, Melkonian M, Soltis DE, Soltis PS, Rothfels C, Pokorny L, Shaw JA, DeGironimo L, Stevenson DW, Villarreal JC, Chen T, Kutchan TM, Rolf M, Baucom RS, Deyholos MK, Samudrala R, Tian Z, Wu X, Sun X, Zhang Y, Wang J, Leebens-Mack J, Wong GK.

Gigascience. 2014 Oct 27;3:17. doi: 10.1186/2047-217X-3-17. eCollection 2014. Review.

18.

Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants.

Zheng C, Kononenko A, Leebens-Mack J, Lyons E, Sankoff D.

BMC Genomics. 2014;15 Suppl 6:S8. doi: 10.1186/1471-2164-15-S6-S8. Epub 2014 Oct 17.

19.

Yucca aloifolia (Asparagaceae) opts out of an obligate pollination mutualism.

Rentsch JD, Leebens-Mack J.

Am J Bot. 2014 Dec;101(12):2062-7. doi: 10.3732/ajb.1400351. Epub 2014 Nov 26.

20.

Bayesian phylogeny of sucrose transporters: ancient origins, differential expansion and convergent evolution in monocots and dicots.

Peng D, Gu X, Xue LJ, Leebens-Mack JH, Tsai CJ.

Front Plant Sci. 2014 Nov 12;5:615. doi: 10.3389/fpls.2014.00615. eCollection 2014.

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