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Results: 1 to 20 of 80

1.

Yucca aloifolia (Asparagaceae) opts out of an obligate pollination mutualism1.

Rentsch JD, Leebens-Mack J.

Am J Bot. 2014 Dec;101(12):2062-7. doi: 10.3732/ajb.1400351. Epub 2014 Nov 26.

PMID:
25480703
[PubMed - in process]
2.

Bayesian phylogeny of sucrose transporters: ancient origins, differential expansion and convergent evolution in monocots and dicots.

Peng D, Gu X, Xue LJ, Leebens-Mack JH, Tsai CJ.

Front Plant Sci. 2014 Nov 12;5:615. doi: 10.3389/fpls.2014.00615. eCollection 2014.

PMID:
25429293
[PubMed]
Free PMC Article
3.

Phylotranscriptomic analysis of the origin and early diversification of land plants.

Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, Melkonian M, Soltis DE, Soltis PS, Miles NW, Rothfels CJ, Pokorny L, Shaw AJ, DeGironimo L, Stevenson DW, Surek B, Villarreal JC, Roure B, Philippe H, dePamphilis CW, Chen T, Deyholos MK, Baucom RS, Kutchan TM, Augustin MM, Wang J, Zhang Y, Tian Z, Yan Z, Wu X, Sun X, Wong GK, Leebens-Mack J.

Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):E4859-68. doi: 10.1073/pnas.1323926111. Epub 2014 Oct 29.

PMID:
25355905
[PubMed - in process]
Free PMC Article
4.

Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes.

Cannon SB, McKain MR, Harkess A, Nelson MN, Dash S, Deyholos MK, Peng Y, Joyce B, Stewart CN Jr, Rolf M, Kutchan T, Tan X, Chen C, Zhang Y, Carpenter E, Wong GK, Doyle JJ, Leebens-Mack J.

Mol Biol Evol. 2015 Jan;32(1):193-210. doi: 10.1093/molbev/msu296. Epub 2014 Oct 27.

PMID:
25349287
[PubMed - in process]
5.

Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor.

Floyd SK, Ryan JG, Conway SJ, Brenner E, Burris KP, Burris JN, Chen T, Edger PP, Graham SW, Leebens-Mack JH, Pires JC, Rothfels CJ, Sigel EM, Stevenson DW, Neal Stewart C Jr, Wong GK, Bowman JL.

Mol Phylogenet Evol. 2014 Dec;81:159-73. doi: 10.1016/j.ympev.2014.06.017. Epub 2014 Sep 27.

PMID:
25263420
[PubMed - in process]
Free Article
6.

Advancing data reuse in phyloinformatics using an ontology-driven Semantic Web approach.

Panahiazar M, Sheth AP, Ranabahu A, Vos RA, Leebens-Mack J.

BMC Med Genomics. 2013;6 Suppl 3:S5. doi: 10.1186/1755-8794-6-S3-S5. Epub 2013 Nov 11.

PMID:
24565381
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Phylogenetics and diversification of morning glories (tribe Ipomoeeae, Convolvulaceae) based on whole plastome sequences.

Eserman LA, Tiley GP, Jarret RL, Leebens-Mack JH, Miller RE.

Am J Bot. 2014 Jan;101(1):92-103. doi: 10.3732/ajb.1300207. Epub 2013 Dec 26.

PMID:
24375828
[PubMed - indexed for MEDLINE]
8.

Assembly and validation of the genome of the nonmodel basal angiosperm Amborella.

Chamala S, Chanderbali AS, Der JP, Lan T, Walts B, Albert VA, dePamphilis CW, Leebens-Mack J, Rounsley S, Schuster SC, Wing RA, Xiao N, Moore R, Soltis PS, Soltis DE, Barbazuk WB.

Science. 2013 Dec 20;342(6165):1516-7. doi: 10.1126/science.1241130.

PMID:
24357320
[PubMed - indexed for MEDLINE]
9.

Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)?

Barrett CF, Specht CD, Leebens-Mack J, Stevenson DW, Zomlefer WB, Davis JI.

Ann Bot. 2014 Jan;113(1):119-33. doi: 10.1093/aob/mct264. Epub 2013 Nov 25.

PMID:
24280362
[PubMed - indexed for MEDLINE]
10.

Young, intact and nested retrotransposons are abundant in the onion and asparagus genomes.

Vitte C, Estep MC, Leebens-Mack J, Bennetzen JL.

Ann Bot. 2013 Sep;112(5):881-9. doi: 10.1093/aob/mct155. Epub 2013 Jul 25.

PMID:
23887091
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.).

Mercati F, Riccardi P, Leebens-Mack J, Abenavoli MR, Falavigna A, Sunseri F.

Plant Sci. 2013 Apr;203-204:115-23. doi: 10.1016/j.plantsci.2013.01.002. Epub 2013 Jan 16.

PMID:
23415335
[PubMed - indexed for MEDLINE]
12.

Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies.

Bliss BJ, Wanke S, Barakat A, Ayyampalayam S, Wickett N, Wall PK, Jiao Y, Landherr L, Ralph PE, Hu Y, Neinhuis C, Leebens-Mack J, Arumuganathan K, Clifton SW, Maximova SN, Ma H, dePamphilis CW.

BMC Plant Biol. 2013 Jan 24;13:13. doi: 10.1186/1471-2229-13-13.

PMID:
23347749
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes.

Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, Depamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, Jordon-Thaden I, Kutchan TM, Leebens-Mack J, Melkonian M, Miles N, Myburg H, Patterson J, Pires JC, Ralph P, Rolf M, Sage RF, Soltis D, Soltis P, Stevenson D, Stewart CN Jr, Surek B, Thomsen CJ, Villarreal JC, Wu X, Zhang Y, Deyholos MK, Wong GK.

PLoS One. 2012;7(11):e50226. doi: 10.1371/journal.pone.0050226. Epub 2012 Nov 21.

PMID:
23185583
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Homoploid hybrid origin of Yucca gloriosa: intersectional hybrid speciation in Yucca (Agavoideae, Asparagaceae).

Rentsch JD, Leebens-Mack J.

Ecol Evol. 2012 Sep;2(9):2213-22. doi: 10.1002/ece3.328. Epub 2012 Aug 1.

PMID:
23139880
[PubMed]
Free PMC Article
15.

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.

D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengellé J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain MR, Leebens-Mack J, Burgess D, Freeling M, Mbéguié-A-Mbéguié D, Chabannes M, Wicker T, Panaud O, Barbosa J, Hribova E, Heslop-Harrison P, Habas R, Rivallan R, Francois P, Poiron C, Kilian A, Burthia D, Jenny C, Bakry F, Brown S, Guignon V, Kema G, Dita M, Waalwijk C, Joseph S, Dievart A, Jaillon O, Leclercq J, Argout X, Lyons E, Almeida A, Jeridi M, Dolezel J, Roux N, Risterucci AM, Weissenbach J, Ruiz M, Glaszmann JC, Quétier F, Yahiaoui N, Wincker P.

Nature. 2012 Aug 9;488(7410):213-7. doi: 10.1038/nature11241.

PMID:
22801500
[PubMed - indexed for MEDLINE]
16.

The phenylalanine ammonia lyase (PAL) gene family shows a gymnosperm-specific lineage.

Bagal UR, Leebens-Mack JH, Lorenz WW, Dean JF.

BMC Genomics. 2012 Jun 11;13 Suppl 3:S1. doi: 10.1186/1471-2164-13-S3-S1.

PMID:
22759610
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae).

McKain MR, Wickett N, Zhang Y, Ayyampalayam S, McCombie WR, Chase MW, Pires JC, dePamphilis CW, Leebens-Mack J.

Am J Bot. 2012 Feb;99(2):397-406. doi: 10.3732/ajb.1100537. Epub 2012 Feb 1.

PMID:
22301890
[PubMed - indexed for MEDLINE]
Free Article
18.

Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae.

Steele PR, Hertweck KL, Mayfield D, McKain MR, Leebens-Mack J, Pires JC.

Am J Bot. 2012 Feb;99(2):330-48. doi: 10.3732/ajb.1100491. Epub 2012 Jan 30.

PMID:
22291168
[PubMed - indexed for MEDLINE]
Free Article
19.

A genome triplication associated with early diversification of the core eudicots.

Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, Deyholos MK, Kutchan TM, Chanderbali AS, Soltis PS, Stevenson DW, McCombie R, Pires JC, Wong GK, Soltis DE, Depamphilis CW.

Genome Biol. 2012 Jan 26;13(1):R3. doi: 10.1186/gb-2012-13-1-r3.

PMID:
22280555
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Geographic isolation trumps coevolution as a driver of yucca and yucca moth diversification.

Althoff DM, Segraves KA, Smith CI, Leebens-Mack J, Pellmyr O.

Mol Phylogenet Evol. 2012 Mar;62(3):898-906. doi: 10.1016/j.ympev.2011.11.024. Epub 2011 Dec 8.

PMID:
22178365
[PubMed - indexed for MEDLINE]

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