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Results: 1 to 20 of 32

1.

OrthoInspector 2.0: Software and database updates.

Linard B, Allot A, Schneider R, Morel C, Ripp R, Bigler M, Thompson JD, Poch O, Lecompte O.

Bioinformatics. 2015 Feb 1;31(3):447-8. doi: 10.1093/bioinformatics/btu642. Epub 2014 Oct 1.

PMID:
25273105
2.

Retinoic acid receptor subtype-specific transcriptotypes in the early zebrafish embryo.

Samarut E, Gaudin C, Hughes S, Gillet B, de Bernard S, Jouve PE, Buffat L, Allot A, Lecompte O, Berekelya L, Rochette-Egly C, Laudet V.

Mol Endocrinol. 2014 Feb;28(2):260-72. doi: 10.1210/me.2013-1358. Epub 2014 Jan 9.

PMID:
24422634
3.

PARSEC: PAtteRn SEarch and Contextualization.

Allot A, Anno YN, Poidevin L, Ripp R, Poch O, Lecompte O.

Bioinformatics. 2013 Oct 15;29(20):2643-4. doi: 10.1093/bioinformatics/btt455. Epub 2013 Aug 7.

4.

Detection and characterisation of mutations responsible for allele-specific protein thermostabilities at the Mn-superoxide dismutase gene in the deep-sea hydrothermal vent polychaete Alvinella pompejana.

Bruneaux M, Mary J, Verheye M, Lecompte O, Poch O, Jollivet D, Tanguy A.

J Mol Evol. 2013 May;76(5):295-310. doi: 10.1007/s00239-013-9559-y. Epub 2013 Apr 23.

PMID:
23608997
5.

Whole-exome sequencing identifies LRIT3 mutations as a cause of autosomal-recessive complete congenital stationary night blindness.

Zeitz C, Jacobson SG, Hamel CP, Bujakowska K, Neuillé M, Orhan E, Zanlonghi X, Lancelot ME, Michiels C, Schwartz SB, Bocquet B; Congenital Stationary Night Blindness Consortium, Antonio A, Audier C, Letexier M, Saraiva JP, Luu TD, Sennlaub F, Nguyen H, Poch O, Dollfus H, Lecompte O, Kohl S, Sahel JA, Bhattacharya SS, Audo I.

Am J Hum Genet. 2013 Jan 10;92(1):67-75. doi: 10.1016/j.ajhg.2012.10.023. Epub 2012 Dec 13.

6.

Functional insights into the core-TFIIH from a comparative survey.

Bedez F, Linard B, Brochet X, Ripp R, Thompson JD, Moras D, Lecompte O, Poch O.

Genomics. 2013 Mar;101(3):178-86. doi: 10.1016/j.ygeno.2012.11.003. Epub 2012 Nov 10.

7.

Evolutionary analysis of the ENTH/ANTH/VHS protein superfamily reveals a coevolution between membrane trafficking and metabolism.

De Craene JO, Ripp R, Lecompte O, Thompson JD, Poch O, Friant S.

BMC Genomics. 2012 Jul 2;13:297. doi: 10.1186/1471-2164-13-297.

8.

KD4v: Comprehensible Knowledge Discovery System for Missense Variant.

Luu TD, Rusu A, Walter V, Linard B, Poidevin L, Ripp R, Moulinier L, Muller J, Raffelsberger W, Wicker N, Lecompte O, Thompson JD, Poch O, Nguyen H.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W71-5. doi: 10.1093/nar/gks474. Epub 2012 May 27.

9.

Proteome adaptation to high temperatures in the ectothermic hydrothermal vent Pompeii worm.

Jollivet D, Mary J, Gagnière N, Tanguy A, Fontanillas E, Boutet I, Hourdez S, Segurens B, Weissenbach J, Poch O, Lecompte O.

PLoS One. 2012;7(2):e31150. doi: 10.1371/journal.pone.0031150. Epub 2012 Feb 10.

10.

Whole-exome sequencing identifies mutations in GPR179 leading to autosomal-recessive complete congenital stationary night blindness.

Audo I, Bujakowska K, Orhan E, Poloschek CM, Defoort-Dhellemmes S, Drumare I, Kohl S, Luu TD, Lecompte O, Zrenner E, Lancelot ME, Antonio A, Germain A, Michiels C, Audier C, Letexier M, Saraiva JP, Leroy BP, Munier FL, Mohand-Saïd S, Lorenz B, Friedburg C, Preising M, Kellner U, Renner AB, Moskova-Doumanova V, Berger W, Wissinger B, Hamel CP, Schorderet DF, De Baere E, Sharon D, Banin E, Jacobson SG, Bonneau D, Zanlonghi X, Le Meur G, Casteels I, Koenekoop R, Long VW, Meire F, Prescott K, de Ravel T, Simmons I, Nguyen H, Dollfus H, Poch O, Léveillard T, Nguyen-Ba-Charvet K, Sahel JA, Bhattacharya SS, Zeitz C.

Am J Hum Genet. 2012 Feb 10;90(2):321-30. doi: 10.1016/j.ajhg.2011.12.007. Erratum in: Am J Hum Genet. 2012 Jul 13;91(1):209.

11.

Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels.

Boutet I, Ripp R, Lecompte O, Dossat C, Corre E, Tanguy A, Lallier FH.

BMC Genomics. 2011 Oct 28;12:530. doi: 10.1186/1471-2164-12-530.

12.

Genome-wide in silico identification of new conserved and functional retinoic acid receptor response elements (direct repeats separated by 5 bp).

Lalevée S, Anno YN, Chatagnon A, Samarut E, Poch O, Laudet V, Benoit G, Lecompte O, Rochette-Egly C.

J Biol Chem. 2011 Sep 23;286(38):33322-34. doi: 10.1074/jbc.M111.263681. Epub 2011 Jul 29.

13.

A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives.

Thompson JD, Linard B, Lecompte O, Poch O.

PLoS One. 2011 Mar 31;6(3):e18093. doi: 10.1371/journal.pone.0018093.

14.

OrthoInspector: comprehensive orthology analysis and visual exploration.

Linard B, Thompson JD, Poch O, Lecompte O.

BMC Bioinformatics. 2011 Jan 10;12:11. doi: 10.1186/1471-2105-12-11.

15.

Genome-wide evidence for an essential role of the human Staf/ZNF143 transcription factor in bidirectional transcription.

Anno YN, Myslinski E, Ngondo-Mbongo RP, Krol A, Poch O, Lecompte O, Carbon P.

Nucleic Acids Res. 2011 Apr;39(8):3116-27. doi: 10.1093/nar/gkq1301. Epub 2010 Dec 21.

16.

Insights into metazoan evolution from Alvinella pompejana cDNAs.

Gagnière N, Jollivet D, Boutet I, Brélivet Y, Busso D, Da Silva C, Gaill F, Higuet D, Hourdez S, Knoops B, Lallier F, Leize-Wagner E, Mary J, Moras D, Perrodou E, Rees JF, Segurens B, Shillito B, Tanguy A, Thierry JC, Weissenbach J, Wincker P, Zal F, Poch O, Lecompte O.

BMC Genomics. 2010 Nov 16;11:634. doi: 10.1186/1471-2164-11-634.

17.

Determining gene flow and the influence of selection across the equatorial barrier of the East Pacific Rise in the tube-dwelling polychaete Alvinella pompejana.

Plouviez S, Le Guen D, Lecompte O, Lallier FH, Jollivet D.

BMC Evol Biol. 2010 Jul 22;10:220. doi: 10.1186/1471-2148-10-220.

18.

Functional characterization and high-throughput proteomic analysis of interrupted genes in the archaeon Sulfolobus solfataricus.

Cobucci-Ponzano B, Guzzini L, Benelli D, Londei P, Perrodou E, Lecompte O, Tran D, Sun J, Wei J, Mathur EJ, Rossi M, Moracci M.

J Proteome Res. 2010 May 7;9(5):2496-507. doi: 10.1021/pr901166q.

PMID:
20192274
19.

SM2PH-db: an interactive system for the integrated analysis of phenotypic consequences of missense mutations in proteins involved in human genetic diseases.

Friedrich A, Garnier N, Gagnière N, Nguyen H, Albou LP, Biancalana V, Bettler E, Deléage G, Lecompte O, Muller J, Moras D, Mandel JL, Toursel T, Moulinier L, Poch O.

Hum Mutat. 2010 Feb;31(2):127-35. doi: 10.1002/humu.21155.

PMID:
19921752
20.

Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

Gallien S, Perrodou E, Carapito C, Deshayes C, Reyrat JM, Van Dorsselaer A, Poch O, Schaeffer C, Lecompte O.

Genome Res. 2009 Jan;19(1):128-35. doi: 10.1101/gr.081901.108. Epub 2008 Oct 27.

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