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Results: 1 to 20 of 41

1.

Speeding cis-trans regulation discovery by phylogenomic analyses coupled with screenings of an arrayed library of Arabidopsis transcription factors.

Castrillo G, Turck F, Leveugle M, Lecharny A, Carbonero P, Coupland G, Paz-Ares J, Oñate-Sánchez L.

PLoS One. 2011;6(6):e21524. doi: 10.1371/journal.pone.0021524. Epub 2011 Jun 27.

PMID:
21738689
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Exploration of plant genomes in the FLAGdb++ environment.

Dèrozier S, Samson F, Tamby JP, Guichard C, Brunaud V, Grevet P, Gagnot S, Label P, Leplé JC, Lecharny A, Aubourg S.

Plant Methods. 2011 Mar 29;7:8. doi: 10.1186/1746-4811-7-8.

PMID:
21447150
[PubMed]
Free PMC Article
3.

Improved detection of motifs with preferential location in promoters.

Bernard V, Lecharny A, Brunaud V.

Genome. 2010 Sep;53(9):739-52. doi: 10.1139/g10-042.

PMID:
20924423
[PubMed - indexed for MEDLINE]
4.

TC-motifs at the TATA-box expected position in plant genes: a novel class of motifs involved in the transcription regulation.

Bernard V, Brunaud V, Lecharny A.

BMC Genomics. 2010 Mar 12;11:166. doi: 10.1186/1471-2164-11-166.

PMID:
20222994
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis.

Deveaux Y, Toffano-Nioche C, Claisse G, Thareau V, Morin H, Laufs P, Moreau H, Kreis M, Lecharny A.

BMC Evol Biol. 2008 Oct 24;8:291. doi: 10.1186/1471-2148-8-291.

PMID:
18950478
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Unique genes in plants: specificities and conserved features throughout evolution.

Armisén D, Lecharny A, Aubourg S.

BMC Evol Biol. 2008 Oct 10;8:280. doi: 10.1186/1471-2148-8-280.

PMID:
18847470
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome.

Aubourg S, Martin-Magniette ML, Brunaud V, Taconnat L, Bitton F, Balzergue S, Jullien PE, Ingouff M, Thareau V, Schiex T, Lecharny A, Renou JP.

BMC Genomics. 2007 Nov 2;8:401.

PMID:
17980019
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform.

Gagnot S, Tamby JP, Martin-Magniette ML, Bitton F, Taconnat L, Balzergue S, Aubourg S, Renou JP, Lecharny A, Brunaud V.

Nucleic Acids Res. 2008 Jan;36(Database issue):D986-90. Epub 2007 Oct 16.

PMID:
17940091
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.

Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyère C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pè ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quétier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization.

Nature. 2007 Sep 27;449(7161):463-7. Epub 2007 Aug 26.

PMID:
17721507
[PubMed - indexed for MEDLINE]
10.

DEAD-box RNA helicases in Arabidopsis thaliana: establishing a link between quantitative expression, gene structure and evolution of a family of genes.

Mingam A, Toffano-Nioche C, Brunaud V, Boudet N, Kreis M, Lecharny A.

Plant Biotechnol J. 2004 Sep;2(5):401-15.

PMID:
17168887
[PubMed]
11.

Formation of the Arabidopsis pentatricopeptide repeat family.

Rivals E, Bruyère C, Toffano-Nioche C, Lecharny A.

Plant Physiol. 2006 Jul;141(3):825-39.

PMID:
16825340
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts.

Aubourg S, Brunaud V, Bruyère C, Cock M, Cooke R, Cottet A, Couloux A, Déhais P, Deléage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, Geourjon C, Grienenberger JM, Houlné G, Jamet E, Lechauve F, Leleu O, Leroy P, Mache R, Meyer C, Nedjari H, Negrutiu I, Orsini V, Peyretaillade E, Pommier C, Raes J, Risler JL, Rivière S, Rombauts S, Rouzé P, Schneider M, Schwob P, Small I, Soumayet-Kampetenga G, Stankovski D, Toffano C, Tognolli M, Caboche M, Lecharny A.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D641-6.

PMID:
15608279
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.

Lurin C, Andrés C, Aubourg S, Bellaoui M, Bitton F, Bruyère C, Caboche M, Debast C, Gualberto J, Hoffmann B, Lecharny A, Le Ret M, Martin-Magniette ML, Mireau H, Peeters N, Renou JP, Szurek B, Taconnat L, Small I.

Plant Cell. 2004 Aug;16(8):2089-103. Epub 2004 Jul 21.

PMID:
15269332
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

FLAGdb++: a database for the functional analysis of the Arabidopsis genome.

Samson F, Brunaud V, Duchêne S, De Oliveira Y, Caboche M, Lecharny A, Aubourg S.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D347-50.

PMID:
14681431
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Introns in, introns out in plant gene families: a genomic approach of the dynamics of gene structure.

Lecharny A, Boudet N, Gy I, Aubourg S, Kreis M.

J Struct Funct Genomics. 2003;3(1-4):111-6.

PMID:
12836690
[PubMed - indexed for MEDLINE]
16.

T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites.

Brunaud V, Balzergue S, Dubreucq B, Aubourg S, Samson F, Chauvin S, Bechtold N, Cruaud C, DeRose R, Pelletier G, Lepiniec L, Caboche M, Lecharny A.

EMBO Rep. 2002 Dec;3(12):1152-7. Epub 2002 Nov 21.

PMID:
12446565
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genomic analysis of the terpenoid synthase ( AtTPS) gene family of Arabidopsis thaliana.

Aubourg S, Lecharny A, Bohlmann J.

Mol Genet Genomics. 2002 Aug;267(6):730-45. Epub 2002 Jun 29.

PMID:
12207221
[PubMed - indexed for MEDLINE]
18.

FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants.

Samson F, Brunaud V, Balzergue S, Dubreucq B, Lepiniec L, Pelletier G, Caboche M, Lecharny A.

Nucleic Acids Res. 2002 Jan 1;30(1):94-7.

PMID:
11752264
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabditis, and Drosophila.

Boudet N, Aubourg S, Toffano-Nioche C, Kreis M, Lecharny A.

Genome Res. 2001 Dec;11(12):2101-14.

PMID:
11731501
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Improved PCR-walking for large-scale isolation of plant T-DNA borders.

Balzergue S, Dubreucq B, Chauvin S, Le-Clainche I, Le Boulaire F, de Rose R, Samson F, Biaudet V, Lecharny A, Cruaud C, Weissenbach J, Caboche M, Lepiniec L.

Biotechniques. 2001 Mar;30(3):496-8, 502, 504. No abstract available.

PMID:
11252785
[PubMed - indexed for MEDLINE]

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