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Results: 12

1.

tmBioC: improving interoperability of text-mining tools with BioC.

Khare R, Wei CH, Mao Y, Leaman R, Lu Z.

Database (Oxford). 2014 Jul 25;2014. pii: bau073. doi: 10.1093/database/bau073. Print 2014.

PMID:
25062914
[PubMed - in process]
Free PMC Article
2.

Accessing biomedical literature in the current information landscape.

Khare R, Leaman R, Lu Z.

Methods Mol Biol. 2014;1159:11-31. doi: 10.1007/978-1-4939-0709-0_2.

PMID:
24788259
[PubMed - in process]
3.

NCBI disease corpus: a resource for disease name recognition and concept normalization.

Doğan RI, Leaman R, Lu Z.

J Biomed Inform. 2014 Feb;47:1-10. doi: 10.1016/j.jbi.2013.12.006. Epub 2014 Jan 3.

PMID:
24393765
[PubMed - in process]
Free Article
4.

DNorm: disease name normalization with pairwise learning to rank.

Leaman R, Islamaj Dogan R, Lu Z.

Bioinformatics. 2013 Nov 15;29(22):2909-17. doi: 10.1093/bioinformatics/btt474. Epub 2013 Aug 21.

PMID:
23969135
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions.

Hakenberg J, Voronov D, Nguyên VH, Liang S, Anwar S, Lumpkin B, Leaman R, Tari L, Baral C.

J Biomed Inform. 2012 Oct;45(5):842-50. doi: 10.1016/j.jbi.2012.04.006. Epub 2012 Apr 30.

PMID:
22564364
[PubMed - indexed for MEDLINE]
Free Article
6.

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S3. doi: 10.1186/1471-2105-12-S8-S3.

PMID:
22151929
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Enhancing phylogeography by improving geographical information from GenBank.

Scotch M, Sarkar IN, Mei C, Leaman R, Cheung KH, Ortiz P, Singraur A, Gonzalez G.

J Biomed Inform. 2011 Dec;44 Suppl 1:S44-7. doi: 10.1016/j.jbi.2011.06.005. Epub 2011 Jun 24.

PMID:
21723960
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Efficient extraction of protein-protein interactions from full-text articles.

Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):481-94. doi: 10.1109/TCBB.2010.51.

PMID:
20498514
[PubMed - indexed for MEDLINE]
9.

Overview of BioCreative II gene normalization.

Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S3. doi: 10.1186/gb-2008-9-s2-s3. Epub 2008 Sep 1.

PMID:
18834494
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Inter-species normalization of gene mentions with GNAT.

Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G.

Bioinformatics. 2008 Aug 15;24(16):i126-132. doi: 10.1093/bioinformatics/btn299.

PMID:
18689813
[PubMed - indexed for MEDLINE]
Free Article
11.

BANNER: an executable survey of advances in biomedical named entity recognition.

Leaman R, Gonzalez G.

Pac Symp Biocomput. 2008:652-63.

PMID:
18229723
[PubMed - indexed for MEDLINE]
Free Article
12.

ANCHORING EFFECTS IN SEQUENTIAL CLINICAL JUDGMENTS.

BIERI J, ORCUTT BA, LEAMAN R.

J Abnorm Psychol. 1963 Dec;67:616-23. No abstract available.

PMID:
14084771
[PubMed - indexed for MEDLINE]

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