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Results: 1 to 20 of 49

1.

De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum.

Fox SE, Geniza M, Hanumappa M, Naithani S, Sullivan C, Preece J, Tiwari VK, Elser J, Leonard JM, Sage A, Gresham C, Kerhornou A, Bolser D, McCarthy F, Kersey P, Lazo GR, Jaiswal P.

PLoS One. 2014 May 12;9(5):e96855. doi: 10.1371/journal.pone.0096855. eCollection 2014.

PMID:
24821410
[PubMed - in process]
Free PMC Article
2.

Comparative systems biology reveals allelic variation modulating Tocochromanol profiles in Barley (Hordeum vulgare L.).

Oliver RE, Islamovic E, Obert DE, Wise ML, Herrin LL, Hang A, Harrison SA, Ibrahim A, Marshall JM, Miclaus KJ, Lazo GR, Hu G, Jackson EW.

PLoS One. 2014 May 12;9(5):e96276. doi: 10.1371/journal.pone.0096276. eCollection 2014.

PMID:
24820172
[PubMed - in process]
Free PMC Article
3.

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor.

Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KF, Sehgal SK, Li W, Gill BS, Bevan MW, Simková H, Dolezel J, Weining S, Lazo GR, Anderson OD, Dvorak J.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7940-5. doi: 10.1073/pnas.1219082110. Epub 2013 Apr 22.

PMID:
23610408
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species.

Oliver RE, Tinker NA, Lazo GR, Chao S, Jellen EN, Carson ML, Rines HW, Obert DE, Lutz JD, Shackelford I, Korol AB, Wight CP, Gardner KM, Hattori J, Beattie AD, Bjørnstad Å, Bonman JM, Jannink JL, Sorrells ME, Brown-Guedira GL, Mitchell Fetch JW, Harrison SA, Howarth CJ, Ibrahim A, Kolb FL, McMullen MS, Murphy JP, Ohm HW, Rossnagel BG, Yan W, Miclaus KJ, Hiller J, Maughan PJ, Redman Hulse RR, Anderson JM, Islamovic E, Jackson EW.

PLoS One. 2013;8(3):e58068. doi: 10.1371/journal.pone.0058068. Epub 2013 Mar 22. Erratum in: PLoS One. 2013;8(10). doi:10.1371/annotation/9b2ca31c-0aca-44b1-84a1-8bdf8ded7439.

PMID:
23533580
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Wheat Zapper: a flexible online tool for colinearity studies in grass genomes.

Alnemer LM, Seetan RI, Bassi FM, Chitraranjan C, Helsene A, Loree P, Goshn SB, Gu YQ, Luo MC, Iqbal MJ, Lazo GR, Denton AM, Kianian SF.

Funct Integr Genomics. 2013 Mar;13(1):11-7. doi: 10.1007/s10142-013-0317-4. Epub 2013 Mar 10.

PMID:
23474942
[PubMed - indexed for MEDLINE]
6.

Farinin: characterization of a novel wheat endosperm protein belonging to the prolamin superfamily.

Kasarda DD, Adalsteins E, Lew EJ, Lazo GR, Altenbach SB.

J Agric Food Chem. 2013 Mar 13;61(10):2407-17. doi: 10.1021/jf3053466. Epub 2013 Mar 4.

PMID:
23414243
[PubMed - indexed for MEDLINE]
7.

PIECE: a database for plant gene structure comparison and evolution.

Wang Y, You FM, Lazo GR, Luo MC, Thilmony R, Gordon S, Kianian SF, Gu YQ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1159-66. doi: 10.1093/nar/gks1109. Epub 2012 Nov 24.

PMID:
23180792
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii.

Kumar A, Simons K, Iqbal MJ, de Jiménez MM, Bassi FM, Ghavami F, Al-Azzam O, Drader T, Wang Y, Luo MC, Gu YQ, Denton A, Lazo GR, Xu SS, Dvorak J, Kianian PM, Kianian SF.

BMC Genomics. 2012 Nov 5;13:597. doi: 10.1186/1471-2164-13-597.

PMID:
23127207
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Generation and characterization of the Western Regional Research Center Brachypodium T-DNA insertional mutant collection.

Bragg JN, Wu J, Gordon SP, Guttman ME, Thilmony R, Lazo GR, Gu YQ, Vogel JP.

PLoS One. 2012;7(9):e41916. doi: 10.1371/journal.pone.0041916. Epub 2012 Sep 17.

PMID:
23028431
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Transcriptome and gene expression analysis in cold-acclimated guayule (Parthenium argentatum) rubber-producing tissue.

Ponciano G, McMahan CM, Xie W, Lazo GR, Coffelt TA, Collins-Silva J, Nural-Taban A, Gollery M, Shintani DK, Whalen MC.

Phytochemistry. 2012 Jul;79:57-66. doi: 10.1016/j.phytochem.2012.04.007. Epub 2012 May 17.

PMID:
22608127
[PubMed - indexed for MEDLINE]
11.

Leymus EST linkage maps identify 4NsL-5NsL reciprocal translocation, wheat-Leymus chromosome introgressions, and functionally important gene loci.

Larson SR, Kishii M, Tsujimoto H, Qi L, Chen P, Lazo GR, Jensen KB, Wang RR.

Theor Appl Genet. 2012 Jan;124(1):189-206. doi: 10.1007/s00122-011-1698-1. Epub 2011 Sep 14.

PMID:
21915709
[PubMed - indexed for MEDLINE]
12.

Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon.

Huo N, Garvin DF, You FM, McMahon S, Luo MC, Gu YQ, Lazo GR, Vogel JP.

Theor Appl Genet. 2011 Aug;123(3):455-64. doi: 10.1007/s00122-011-1598-4. Epub 2011 May 20.

PMID:
21597976
[PubMed - indexed for MEDLINE]
13.

Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology.

Oliver RE, Lazo GR, Lutz JD, Rubenfield MJ, Tinker NA, Anderson JM, Wisniewski Morehead NH, Adhikary D, Jellen EN, Maughan PJ, Brown Guedira GL, Chao S, Beattie AD, Carson ML, Rines HW, Obert DE, Bonman JM, Jackson EW.

BMC Genomics. 2011 Jan 27;12:77. doi: 10.1186/1471-2164-12-77.

PMID:
21272354
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes.

Akhunov ED, Akhunova AR, Anderson OD, Anderson JA, Blake N, Clegg MT, Coleman-Derr D, Conley EJ, Crossman CC, Deal KR, Dubcovsky J, Gill BS, Gu YQ, Hadam J, Heo H, Huo N, Lazo GR, Luo MC, Ma YQ, Matthews DE, McGuire PE, Morrell PL, Qualset CO, Renfro J, Tabanao D, Talbert LE, Tian C, Toleno DM, Warburton ML, You FM, Zhang W, Dvorak J.

BMC Genomics. 2010 Dec 14;11:702. doi: 10.1186/1471-2164-11-702.

PMID:
21156062
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development.

You FM, Wanjugi H, Huo N, Lazo GR, Luo MC, Anderson OD, Dvorak J, Gu YQ.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W313-20. doi: 10.1093/nar/gkq425. Epub 2010 May 23.

PMID:
20497996
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.

Gu YQ, Ma Y, Huo N, Vogel JP, You FM, Lazo GR, Nelson WM, Soderlund C, Dvorak J, Anderson OD, Luo MC.

BMC Genomics. 2009 Oct 27;10:496. doi: 10.1186/1471-2164-10-496.

PMID:
19860896
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery.

You FM, Huo N, Gu YQ, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2009 Oct 13;10:331. doi: 10.1186/1471-2105-10-331.

PMID:
19825183
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The wheat omega-gliadin genes: structure and EST analysis.

Anderson OD, Gu YQ, Kong X, Lazo GR, Wu J.

Funct Integr Genomics. 2009 Aug;9(3):397-410. doi: 10.1007/s10142-009-0122-2. Epub 2009 Apr 15.

PMID:
19367421
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Plant and crop databases.

Matthews DE, Lazo GR, Anderson OD.

Methods Mol Biol. 2009;513:243-62. doi: 10.1007/978-1-59745-427-8_13. Review.

PMID:
19347656
[PubMed - indexed for MEDLINE]
20.

Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat.

Huo N, Vogel JP, Lazo GR, You FM, Ma Y, McMahon S, Dvorak J, Anderson OD, Luo MC, Gu YQ.

Plant Mol Biol. 2009 May;70(1-2):47-61. doi: 10.1007/s11103-009-9456-3. Epub 2009 Jan 29.

PMID:
19184460
[PubMed - indexed for MEDLINE]

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