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Items: 13


ExpressionData - A public resource of high quality curated datasets representing gene expression across anatomy, development and experimental conditions.

Zimmermann P, Bleuler S, Laule O, Martin F, Ivanov NV, Campanoni P, Oishi K, Lugon-Moulin N, Wyss M, Hruz T, Gruissem W.

BioData Min. 2014 Aug 31;7:18. doi: 10.1186/1756-0381-7-18. eCollection 2014.


Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions.

Hiss M, Laule O, Meskauskiene RM, Arif MA, Decker EL, Erxleben A, Frank W, Hanke ST, Lang D, Martin A, Neu C, Reski R, Richardt S, Schallenberg-Rüdinger M, Szövényi P, Tiko T, Wiedemann G, Wolf L, Zimmermann P, Rensing SA.

Plant J. 2014 Aug;79(3):530-9. doi: 10.1111/tpj.12572. Epub 2014 Jul 9.


Global regulatory architecture of human, mouse and rat tissue transcriptomes.

Prasad A, Kumar SS, Dessimoz C, Bleuler S, Laule O, Hruz T, Gruissem W, Zimmermann P.

BMC Genomics. 2013 Oct 20;14:716. doi: 10.1186/1471-2164-14-716.


Controlled vocabularies for plant anatomical parts optimized for use in data analysis tools and for cross-species studies.

Meskauskiene R, Laule O, Ivanov NV, Martin F, Wyss M, Gruissem W, Zimmermann P.

Plant Methods. 2013 Aug 6;9(1):33. doi: 10.1186/1746-4811-9-33.


A multilevel gamma-clustering layout algorithm for visualization of biological networks.

Hruz T, Wyss M, Lucas C, Laule O, von Rohr P, Zimmermann P, Bleuler S.

Adv Bioinformatics. 2013;2013:920325. doi: 10.1155/2013/920325. Epub 2013 Jun 26.


Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome.

Beleut M, Zimmermann P, Baudis M, Bruni N, Bühlmann P, Laule O, Luu VD, Gruissem W, Schraml P, Moch H.

BMC Cancer. 2012 Jul 23;12:310. doi: 10.1186/1471-2407-12-310.


RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization.

Hruz T, Wyss M, Docquier M, Pfaffl MW, Masanetz S, Borghi L, Verbrugghe P, Kalaydjieva L, Bleuler S, Laule O, Descombes P, Gruissem W, Zimmermann P.

BMC Genomics. 2011 Mar 21;12:156. doi: 10.1186/1471-2164-12-156.


Genevestigator transcriptome meta-analysis and biomarker search using rice and barley gene expression databases.

Zimmermann P, Laule O, Schmitz J, Hruz T, Bleuler S, Gruissem W.

Mol Plant. 2008 Sep;1(5):851-7. doi: 10.1093/mp/ssn048. Erratum in: Mol Plant. 2008 Nov;1(6):1088.


Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes.

Hruz T, Laule O, Szabo G, Wessendorp F, Bleuler S, Oertle L, Widmayer P, Gruissem W, Zimmermann P.

Adv Bioinformatics. 2008;2008:420747. doi: 10.1155/2008/420747. Epub 2008 Jul 8.


Web-based analysis of the mouse transcriptome using Genevestigator.

Laule O, Hirsch-Hoffmann M, Hruz T, Gruissem W, Zimmermann P.

BMC Bioinformatics. 2006 Jun 21;7:311.


Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana.

Wille A, Zimmermann P, Vranová E, Fürholz A, Laule O, Bleuler S, Hennig L, Prelic A, von Rohr P, Thiele L, Zitzler E, Gruissem W, Bühlmann P.

Genome Biol. 2004;5(11):R92. Epub 2004 Oct 25.


Crosstalk between cytosolic and plastidial pathways of isoprenoid biosynthesis in Arabidopsis thaliana.

Laule O, Fürholz A, Chang HS, Zhu T, Wang X, Heifetz PB, Gruissem W, Lange M.

Proc Natl Acad Sci U S A. 2003 May 27;100(11):6866-71. Epub 2003 May 14.


Identification of a novel gene coding for neoxanthin synthase from Solanum tuberosum.

Al-Babili S, Hugueney P, Schledz M, Welsch R, Frohnmeyer H, Laule O, Beyer P.

FEBS Lett. 2000 Nov 24;485(2-3):168-72.

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