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Results: 1 to 20 of 27

1.

Social determinants and the classification of disease: descriptive epidemiology of selected socially mediated disease constellations.

Levine RS, Kilbourne BA, Rust GS, Langston MA, Husaini BA, Gittner LS, Sanderson M, Hennekens CH.

PLoS One. 2014 Nov 5;9(11):e110271. doi: 10.1371/journal.pone.0110271. eCollection 2014.

PMID:
25372286
[PubMed - in process]
Free PMC Article
2.

Scalable combinatorial tools for health disparities research.

Langston MA, Levine RS, Kilbourne BJ, Rogers GL, Kershenbaum AD, Baktash SH, Coughlin SS, Saxton AM, Agboto VK, Hood DB, Litchveld MY, Oyana TJ, Matthews-Juarez P, Juarez PD.

Int J Environ Res Public Health. 2014 Oct 10;11(10):10419-43. doi: 10.3390/ijerph111010419.

PMID:
25310540
[PubMed - in process]
Free PMC Article
3.

Differential Shannon entropy and differential coefficient of variation: alternatives and augmentations to differential expression in the search for disease-related genes.

Wang K, Phillips CA, Rogers GL, Barrenas F, Benson M, Langston MA.

Int J Comput Biol Drug Des. 2014;7(2-3):183-94. doi: 10.1504/IJCBDD.2014.061656. Epub 2014 May 28.

PMID:
24878729
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types.

Zhang Y, Phillips CA, Rogers GL, Baker EJ, Chesler EJ, Langston MA.

BMC Bioinformatics. 2014 Apr 15;15:110. doi: 10.1186/1471-2105-15-110.

PMID:
24731198
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

DNA methylation changes separate allergic patients from healthy controls and may reflect altered CD4+ T-cell population structure.

Nestor CE, Barrenäs F, Wang H, Lentini A, Zhang H, Bruhn S, Jörnsten R, Langston MA, Rogers G, Gustafsson M, Benson M.

PLoS Genet. 2014 Jan;10(1):e1004059. doi: 10.1371/journal.pgen.1004059. Epub 2014 Jan 2.

PMID:
24391521
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A systematic comparison of genome-scale clustering algorithms.

Jay JJ, Eblen JD, Zhang Y, Benson M, Perkins AD, Saxton AM, Voy BH, Chesler EJ, Langston MA.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S7. doi: 10.1186/1471-2105-13-S10-S7.

PMID:
22759431
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The maximum clique enumeration problem: algorithms, applications, and implementations.

Eblen JD, Phillips CA, Rogers GL, Langston MA.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S5. doi: 10.1186/1471-2105-13-S10-S5.

PMID:
22759429
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Highly interconnected genes in disease-specific networks are enriched for disease-associated polymorphisms.

Barrenäs F, Chavali S, Alves AC, Coin L, Jarvelin MR, Jörnsten R, Langston MA, Ramasamy A, Rogers G, Wang H, Benson M.

Genome Biol. 2012 Jun 15;13(6):R46. doi: 10.1186/gb-2012-13-6-r46.

PMID:
22703998
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genetic dissection of acute ethanol responsive gene networks in prefrontal cortex: functional and mechanistic implications.

Wolen AR, Phillips CA, Langston MA, Putman AH, Vorster PJ, Bruce NA, York TP, Williams RW, Miles MF.

PLoS One. 2012;7(4):e33575. doi: 10.1371/journal.pone.0033575. Epub 2012 Apr 12.

PMID:
22511924
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

GeneWeaver: a web-based system for integrative functional genomics.

Baker EJ, Jay JJ, Bubier JA, Langston MA, Chesler EJ.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1067-76. doi: 10.1093/nar/gkr968. Epub 2011 Nov 12.

PMID:
22080549
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Increased expression of IRF4 and ETS1 in CD4+ cells from patients with intermittent allergic rhinitis.

Bruhn S, Barrenäs F, Mobini R, Andersson BA, Chavali S, Egan BS, Hovig E, Sandve GK, Langston MA, Rogers G, Wang H, Benson M.

Allergy. 2012 Jan;67(1):33-40. doi: 10.1111/j.1398-9995.2011.02707.x. Epub 2011 Sep 15.

PMID:
21919915
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identifying genetic loci and spleen gene coexpression networks underlying immunophenotypes in BXD recombinant inbred mice.

Lynch RM, Naswa S, Rogers GL Jr, Kania SA, Das S, Chesler EJ, Saxton AM, Langston MA, Voy BH.

Physiol Genomics. 2010 May;41(3):244-53. doi: 10.1152/physiolgenomics.00020.2010. Epub 2010 Feb 23.

PMID:
20179155
[PubMed - in process]
Free PMC Article
13.

Comparison of threshold selection methods for microarray gene co-expression matrices.

Borate BR, Chesler EJ, Langston MA, Saxton AM, Voy BH.

BMC Res Notes. 2009 Dec 2;2:240. doi: 10.1186/1756-0500-2-240.

PMID:
19954523
[PubMed]
Free PMC Article
14.

Threshold selection in gene co-expression networks using spectral graph theory techniques.

Perkins AD, Langston MA.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S4. doi: 10.1186/1471-2105-10-S11-S4.

PMID:
19811688
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Bridging the gap between systems biology and medicine.

Clermont G, Auffray C, Moreau Y, Rocke DM, Dalevi D, Dubhashi D, Marshall DR, Raasch P, Dehne F, Provero P, Tegner J, Aronow BJ, Langston MA, Benson M.

Genome Med. 2009 Sep 29;1(9):88. doi: 10.1186/gm88.

PMID:
19754960
[PubMed]
Free PMC Article
16.

Ontological Discovery Environment: a system for integrating gene-phenotype associations.

Baker EJ, Jay JJ, Philip VM, Zhang Y, Li Z, Kirova R, Langston MA, Chesler EJ.

Genomics. 2009 Dec;94(6):377-87. doi: 10.1016/j.ygeno.2009.08.016. Epub 2009 Sep 3.

PMID:
19733230
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Reconstructing generalized logical networks of transcriptional regulation in mouse brain from temporal gene expression data.

Song MJ, Lewis CK, Lance ER, Chesler EJ, Yordanova RK, Langston MA, Lodowski KH, Bergeson SE.

EURASIP J Bioinform Syst Biol. 2009:545176. doi: 10.1155/2009/545176. Epub 2009 Mar 17.

PMID:
19300527
[PubMed]
Free PMC Article
18.

A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation.

Mobini R, Andersson BA, Erjefält J, Hahn-Zoric M, Langston MA, Perkins AD, Cardell LO, Benson M.

BMC Syst Biol. 2009 Feb 12;3:19. doi: 10.1186/1752-0509-3-19.

PMID:
19216740
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-level analysis of genetic regulation of liver gene expression networks.

Gatti D, Maki A, Chesler EJ, Kirova R, Kosyk O, Lu L, Manly KF, Williams RW, Perkins A, Langston MA, Threadgill DW, Rusyn I.

Hepatology. 2007 Aug;46(2):548-57.

PMID:
17542012
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Detecting differential and correlated protein expression in label-free shotgun proteomics.

Zhang B, VerBerkmoes NC, Langston MA, Uberbacher E, Hettich RL, Samatova NF.

J Proteome Res. 2006 Nov;5(11):2909-18.

PMID:
17081042
[PubMed - indexed for MEDLINE]
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