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Items: 1 to 20 of 47

1.

Public Data Archiving in Ecology and Evolution: How Well Are We Doing?

Roche DG, Kruuk LE, Lanfear R, Binning SA.

PLoS Biol. 2015 Nov 10;13(11):e1002295. doi: 10.1371/journal.pbio.1002295. eCollection 2015.

2.

Genomic approaches to selection in outcrossing perennials: focus on essential oil crops.

Kainer D, Lanfear R, Foley WJ, Külheim C.

Theor Appl Genet. 2015 Dec;128(12):2351-65. doi: 10.1007/s00122-015-2591-0. Epub 2015 Aug 4. Review.

PMID:
26239409
3.

INSECT PHYLOGENOMICS. Response to Comment on "Phylogenomics resolves the timing and pattern of insect evolution".

Kjer KM, Ware JL, Rust J, Wappler T, Lanfear R, Jermiin LS, Zhou X, Aspöck H, Aspöck U, Beutel RG, Blanke A, Donath A, Flouri T, Frandsen PB, Kapli P, Kawahara AY, Letsch H, Mayer C, McKenna DD, Meusemann K, Niehuis O, Peters RS, Wiegmann BM, Yeates DK, von Reumont BM, Stamatakis A, Misof B.

Science. 2015 Jul 31;349(6247):487. doi: 10.1126/science.aaa7136.

4.

Phylogenetic uncertainty can bias the number of evolutionary transitions estimated from ancestral state reconstruction methods.

Duchêne S, Lanfear R.

J Exp Zool B Mol Dev Evol. 2015 Sep;324(6):517-24. doi: 10.1002/jez.b.22638. Epub 2015 Jul 14.

PMID:
26173578
5.

Evidence of Experimental Bias in the Life Sciences: Why We Need Blind Data Recording.

Holman L, Head ML, Lanfear R, Jennions MD.

PLoS Biol. 2015 Jul 8;13(7):e1002190. doi: 10.1371/journal.pbio.1002190. eCollection 2015 Jul.

6.

Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates.

Frandsen PB, Calcott B, Mayer C, Lanfear R.

BMC Evol Biol. 2015 Feb 10;15:13. doi: 10.1186/s12862-015-0283-7.

7.

Exploring the Relationships between Mutation Rates, Life History, Genome Size, Environment, and Species Richness in Flowering Plants.

Bromham L, Hua X, Lanfear R, Cowman PF.

Am Nat. 2015 Apr;185(4):507-24. doi: 10.1086/680052. Epub 2015 Feb 10.

PMID:
25811085
8.

The extent and consequences of p-hacking in science.

Head ML, Holman L, Lanfear R, Kahn AT, Jennions MD.

PLoS Biol. 2015 Mar 13;13(3):e1002106. doi: 10.1371/journal.pbio.1002106. eCollection 2015 Mar.

9.

The effects of partitioning on phylogenetic inference.

Kainer D, Lanfear R.

Mol Biol Evol. 2015 Jun;32(6):1611-27. doi: 10.1093/molbev/msv026. Epub 2015 Feb 6.

10.

Generation time, life history and the substitution rate of neutral mutations.

Lehtonen J, Lanfear R.

Biol Lett. 2014 Nov;10(11):20140801. doi: 10.1098/rsbl.2014.0801.

11.

Phylogenomics resolves the timing and pattern of insect evolution.

Misof B, Liu S, Meusemann K, Peters RS, Donath A, Mayer C, Frandsen PB, Ware J, Flouri T, Beutel RG, Niehuis O, Petersen M, Izquierdo-Carrasco F, Wappler T, Rust J, Aberer AJ, Aspöck U, Aspöck H, Bartel D, Blanke A, Berger S, Böhm A, Buckley TR, Calcott B, Chen J, Friedrich F, Fukui M, Fujita M, Greve C, Grobe P, Gu S, Huang Y, Jermiin LS, Kawahara AY, Krogmann L, Kubiak M, Lanfear R, Letsch H, Li Y, Li Z, Li J, Lu H, Machida R, Mashimo Y, Kapli P, McKenna DD, Meng G, Nakagaki Y, Navarrete-Heredia JL, Ott M, Ou Y, Pass G, Podsiadlowski L, Pohl H, von Reumont BM, Schütte K, Sekiya K, Shimizu S, Slipinski A, Stamatakis A, Song W, Su X, Szucsich NU, Tan M, Tan X, Tang M, Tang J, Timelthaler G, Tomizuka S, Trautwein M, Tong X, Uchifune T, Walzl MG, Wiegmann BM, Wilbrandt J, Wipfler B, Wong TK, Wu Q, Wu G, Xie Y, Yang S, Yang Q, Yeates DK, Yoshizawa K, Zhang Q, Zhang R, Zhang W, Zhang Y, Zhao J, Zhou C, Zhou L, Ziesmann T, Zou S, Li Y, Xu X, Zhang Y, Yang H, Wang J, Wang J, Kjer KM, Zhou X.

Science. 2014 Nov 7;346(6210):763-7. doi: 10.1126/science.1257570. Epub 2014 Nov 6.

12.

Gender differences in conference presentations: a consequence of self-selection?

Jones TM, Fanson KV, Lanfear R, Symonds MR, Higgie M.

PeerJ. 2014 Oct 21;2:e627. doi: 10.7717/peerj.627. eCollection 2014.

13.

The impact of calibration and clock-model choice on molecular estimates of divergence times.

Duchêne S, Lanfear R, Ho SY.

Mol Phylogenet Evol. 2014 Sep;78:277-89. doi: 10.1016/j.ympev.2014.05.032. Epub 2014 Jun 6.

PMID:
24910154
14.

Open access is worth considering: a reply to Agrawal.

Lanfear R, Pennell MW.

Trends Plant Sci. 2014 Jun;19(6):340-1. doi: 10.1016/j.tplants.2014.04.006. Epub 2014 Apr 30. No abstract available.

PMID:
24794132
15.

Selecting optimal partitioning schemes for phylogenomic datasets.

Lanfear R, Calcott B, Kainer D, Mayer C, Stamatakis A.

BMC Evol Biol. 2014 Apr 17;14:82. doi: 10.1186/1471-2148-14-82.

16.

Troubleshooting public data archiving: suggestions to increase participation.

Roche DG, Lanfear R, Binning SA, Haff TM, Schwanz LE, Cain KE, Kokko H, Jennions MD, Kruuk LE.

PLoS Biol. 2014 Jan 28;12(1):e1001779. doi: 10.1371/journal.pbio.1001779. eCollection 2014 Jan.

17.
18.

Population size and the rate of evolution.

Lanfear R, Kokko H, Eyre-Walker A.

Trends Ecol Evol. 2014 Jan;29(1):33-41. doi: 10.1016/j.tree.2013.09.009. Epub 2013 Oct 20. Review.

PMID:
24148292
19.

Parasitic plants have increased rates of molecular evolution across all three genomes.

Bromham L, Cowman PF, Lanfear R.

BMC Evol Biol. 2013 Jun 19;13:126. doi: 10.1186/1471-2148-13-126.

20.

Taller plants have lower rates of molecular evolution.

Lanfear R, Ho SY, Jonathan Davies T, Moles AT, Aarssen L, Swenson NG, Warman L, Zanne AE, Allen AP.

Nat Commun. 2013;4:1879. doi: 10.1038/ncomms2836.

PMID:
23695673
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