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Results: 1 to 20 of 158

1.

Non-specific filtering of beta-distributed data.

Wang X, Laird PW, Hinoue T, Groshen S, Siegmund KD.

BMC Bioinformatics. 2014 Jun 19;15(1):199. [Epub ahead of print]

PMID:
24943962
[PubMed - as supplied by publisher]
Free Article
2.

Multiscale representation of genomic signals.

Knijnenburg TA, Ramsey SA, Berman BP, Kennedy KA, Smit AF, Wessels LF, Laird PW, Aderem A, Shmulevich I.

Nat Methods. 2014 Jun;11(6):689-94. doi: 10.1038/nmeth.2924. Epub 2014 Apr 13.

PMID:
24727652
[PubMed - in process]
3.

An epidemiologic and genomic investigation into the obesity paradox in renal cell carcinoma.

Hakimi AA, Furberg H, Zabor EC, Jacobsen A, Schultz N, Ciriello G, Mikklineni N, Fiegoli B, Kim PH, Voss MH, Shen H, Laird PW, Sander C, Reuter VE, Motzer RJ, Hsieh JJ, Russo P.

J Natl Cancer Inst. 2013 Dec 18;105(24):1862-70. doi: 10.1093/jnci/djt310. Epub 2013 Nov 27.

PMID:
24285872
[PubMed - indexed for MEDLINE]
4.

Gene dysregulation by histone variant H2A.Z in bladder cancer.

Kim K, Punj V, Choi J, Heo K, Kim JM, Laird PW, An W.

Epigenetics Chromatin. 2013 Oct 16;6(1):34. doi: 10.1186/1756-8935-6-34.

PMID:
24279307
[PubMed]
Free PMC Article
5.

The landscape of microsatellite instability in colorectal and endometrial cancer genomes.

Kim TM, Laird PW, Park PJ.

Cell. 2013 Nov 7;155(4):858-68. doi: 10.1016/j.cell.2013.10.015.

PMID:
24209623
[PubMed - indexed for MEDLINE]
6.

Alterations of immune response of Non-Small Cell Lung Cancer with Azacytidine.

Wrangle J, Wang W, Koch A, Easwaran H, Mohammad HP, Vendetti F, Vancriekinge W, Demeyer T, Du Z, Parsana P, Rodgers K, Yen RW, Zahnow CA, Taube JM, Brahmer JR, Tykodi SS, Easton K, Carvajal RD, Jones PA, Laird PW, Weisenberger DJ, Tsai S, Juergens RA, Topalian SL, Rudin CM, Brock MV, Pardoll D, Baylin SB.

Oncotarget. 2013 Nov;4(11):2067-79.

PMID:
24162015
[PubMed - in process]
Free PMC Article
7.

The somatic genomic landscape of glioblastoma.

Brennan CW, Verhaak RG, McKenna A, Campos B, Noushmehr H, Salama SR, Zheng S, Chakravarty D, Sanborn JZ, Berman SH, Beroukhim R, Bernard B, Wu CJ, Genovese G, Shmulevich I, Barnholtz-Sloan J, Zou L, Vegesna R, Shukla SA, Ciriello G, Yung WK, Zhang W, Sougnez C, Mikkelsen T, Aldape K, Bigner DD, Van Meir EG, Prados M, Sloan A, Black KL, Eschbacher J, Finocchiaro G, Friedman W, Andrews DW, Guha A, Iacocca M, O'Neill BP, Foltz G, Myers J, Weisenberger DJ, Penny R, Kucherlapati R, Perou CM, Hayes DN, Gibbs R, Marra M, Mills GB, Lander E, Spellman P, Wilson R, Sander C, Weinstein J, Meyerson M, Gabriel S, Laird PW, Haussler D, Getz G, Chin L; TCGA Research Network.

Cell. 2013 Oct 10;155(2):462-77. doi: 10.1016/j.cell.2013.09.034. Erratum in: Cell. 2014 Apr 24;157(3):753.

PMID:
24120142
[PubMed - indexed for MEDLINE]
8.

Inferring tumour purity and stromal and immune cell admixture from expression data.

Yoshihara K, Shahmoradgoli M, Martínez E, Vegesna R, Kim H, Torres-Garcia W, Treviño V, Shen H, Laird PW, Levine DA, Carter SL, Getz G, Stemke-Hale K, Mills GB, Verhaak RG.

Nat Commun. 2013;4:2612. doi: 10.1038/ncomms3612.

PMID:
24113773
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Pan-cancer patterns of somatic copy number alteration.

Zack TI, Schumacher SE, Carter SL, Cherniack AD, Saksena G, Tabak B, Lawrence MS, Zhang CZ, Wala J, Mermel CH, Sougnez C, Gabriel SB, Hernandez B, Shen H, Laird PW, Getz G, Meyerson M, Beroukhim R.

Nat Genet. 2013 Sep 26;45(10):1134-1140. doi: 10.1038/ng.2760. [Epub ahead of print]

PMID:
24071852
[PubMed - as supplied by publisher]
10.

August 2012 cover photo is not coats' disease.

Laird PW, Hubbard GB.

Ophthalmology. 2013 Jul;120(7):e51-2. doi: 10.1016/j.ophtha.2013.03.020. No abstract available.

PMID:
23823530
[PubMed - indexed for MEDLINE]
11.

Alterations in deoxyribonucleic acid (DNA) methylation patterns of Calca, Timp3, Mmp2, and Igf2r are associated with chronic cystitis in a cyclophosphamide-induced mouse model.

Choi IS, Yu K, Kim J, De Guzman E, Weisenberger DJ, Oghamian S, Kim HJ, Lee KH, Carroll C, Trinh BN, Kim M, Houshdaran S, Laird PW, Jones PA, Warburton D, Liang G, Koh CJ.

Urology. 2013 Jul;82(1):253.e9-15. doi: 10.1016/j.urology.2013.04.010.

PMID:
23806407
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Associations between colorectal cancer molecular markers and pathways with clinicopathologic features in older women.

Samadder NJ, Vierkant RA, Tillmans LS, Wang AH, Weisenberger DJ, Laird PW, Lynch CF, Anderson KE, French AJ, Haile RW, Potter JD, Slager SL, Smyrk TC, Thibodeau SN, Cerhan JR, Limburg PJ.

Gastroenterology. 2013 Aug;145(2):348-56.e1-2. doi: 10.1053/j.gastro.2013.05.001. Epub 2013 May 7.

PMID:
23665275
[PubMed - indexed for MEDLINE]
13.

Integrated genomic characterization of endometrial carcinoma.

Cancer Genome Atlas Research Network, Kandoth C, Schultz N, Cherniack AD, Akbani R, Liu Y, Shen H, Robertson AG, Pashtan I, Shen R, Benz CC, Yau C, Laird PW, Ding L, Zhang W, Mills GB, Kucherlapati R, Mardis ER, Levine DA.

Nature. 2013 May 2;497(7447):67-73. doi: 10.1038/nature12113. Erratum in: Nature. 2013 Aug 8;500(7461):242.

PMID:
23636398
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Ciliary body medulloepithelioma associated with pleuropulmonary blastoma.

Laird PW, Grossniklaus HE, Hubbard GB.

Br J Ophthalmol. 2013 Aug;97(8):1079, 1086-7. doi: 10.1136/bjophthalmol-2012-303019. Epub 2013 Apr 23. No abstract available.

PMID:
23613510
[PubMed - indexed for MEDLINE]
15.

Clinical applications of DNA methylation biomarkers in colorectal cancer.

Lange CP, Laird PW.

Epigenomics. 2013 Apr;5(2):105-8. doi: 10.2217/epi.13.4. No abstract available.

PMID:
23566085
[PubMed - indexed for MEDLINE]
Free Article
16.

Interplay between the cancer genome and epigenome.

Shen H, Laird PW.

Cell. 2013 Mar 28;153(1):38-55. doi: 10.1016/j.cell.2013.03.008. Review.

PMID:
23540689
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Epigenetic analysis leads to identification of HNF1B as a subtype-specific susceptibility gene for ovarian cancer.

Shen H, Fridley BL, Song H, Lawrenson K, Cunningham JM, Ramus SJ, Cicek MS, Tyrer J, Stram D, Larson MC, Köbel M; PRACTICAL Consortium, Ziogas A, Zheng W, Yang HP, Wu AH, Wozniak EL, Woo YL, Winterhoff B, Wik E, Whittemore AS, Wentzensen N, Weber RP, Vitonis AF, Vincent D, Vierkant RA, Vergote I, Van Den Berg D, Van Altena AM, Tworoger SS, Thompson PJ, Tessier DC, Terry KL, Teo SH, Templeman C, Stram DO, Southey MC, Sieh W, Siddiqui N, Shvetsov YB, Shu XO, Shridhar V, Wang-Gohrke S, Severi G, Schwaab I, Salvesen HB, Rzepecka IK, Runnebaum IB, Rossing MA, Rodriguez-Rodriguez L, Risch HA, Renner SP, Poole EM, Pike MC, Phelan CM, Pelttari LM, Pejovic T, Paul J, Orlow I, Omar SZ, Olson SH, Odunsi K, Nickels S, Nevanlinna H, Ness RB, Narod SA, Nakanishi T, Moysich KB, Monteiro AN, Moes-Sosnowska J, Modugno F, Menon U, McLaughlin JR, McGuire V, Matsuo K, Adenan NA, Massuger LF, Lurie G, Lundvall L, Lubiński J, Lissowska J, Levine DA, Leminen A, Lee AW, Le ND, Lambrechts S, Lambrechts D, Kupryjanczyk J, Krakstad C, Konecny GE, Kjaer SK, Kiemeney LA, Kelemen LE, Keeney GL, Karlan BY, Karevan R, Kalli KR, Kajiyama H, Ji BT, Jensen A, Jakubowska A, Iversen E, Hosono S, Høgdall CK, Høgdall E, Hoatlin M, Hillemanns P, Heitz F, Hein R, Harter P, Halle MK, Hall P, Gronwald J, Gore M, Goodman MT, Giles GG, Gentry-Maharaj A, Garcia-Closas M, Flanagan JM, Fasching PA, Ekici AB, Edwards R, Eccles D, Easton DF, Dürst M, du Bois A, Dörk T, Doherty JA, Despierre E, Dansonka-Mieszkowska A, Cybulski C, Cramer DW, Cook LS, Chen X, Charbonneau B, Chang-Claude J, Campbell I, Butzow R, Bunker CH, Brueggmann D, Brown R, Brooks-Wilson A, Brinton LA, Bogdanova N, Block MS, Benjamin E, Beesley J, Beckmann MW, Bandera EV, Baglietto L, Bacot F, Armasu SM, Antonenkova N, Anton-Culver H, Aben KK, Liang D, Wu X, Lu K, Hildebrandt MA; Australian Ovarian Cancer Study Group; Australian Cancer Study, Schildkraut JM, Sellers TA, Huntsman D, Berchuck A, Chenevix-Trench G, Gayther SA, Pharoah PD, Laird PW, Goode EL, Pearce CL.

Nat Commun. 2013;4:1628. doi: 10.1038/ncomms2629.

PMID:
23535649
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Low-level processing of Illumina Infinium DNA Methylation BeadArrays.

Triche TJ Jr, Weisenberger DJ, Van Den Berg D, Laird PW, Siegmund KD.

Nucleic Acids Res. 2013 Apr;41(7):e90. doi: 10.1093/nar/gkt090. Epub 2013 Mar 9.

PMID:
23476028
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-scale discovery of DNA-methylation biomarkers for blood-based detection of colorectal cancer.

Lange CP, Campan M, Hinoue T, Schmitz RF, van der Meulen-de Jong AE, Slingerland H, Kok PJ, van Dijk CM, Weisenberger DJ, Shen H, Tollenaar RA, Laird PW.

PLoS One. 2012;7(11):e50266. doi: 10.1371/journal.pone.0050266. Epub 2012 Nov 28.

PMID:
23209692
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A blueprint for an international cancer epigenome consortium. A report from the AACR Cancer Epigenome Task Force.

Beck S, Bernstein BE, Campbell RM, Costello JF, Dhanak D, Ecker JR, Greally JM, Issa JP, Laird PW, Polyak K, Tycko B, Jones PA; AACR Cancer Epigenome Task Force.

Cancer Res. 2012 Dec 15;72(24):6319-24. doi: 10.1158/0008-5472.CAN-12-3658. Epub 2012 Nov 27. No abstract available.

PMID:
23188507
[PubMed - indexed for MEDLINE]
Free Article

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