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Results: 9

1.

Comparative genomics and evolution of regulons of the LacI-family transcription factors.

Ravcheev DA, Khoroshkin MS, Laikova ON, Tsoy OV, Sernova NV, Petrova SA, Rakhmaninova AB, Novichkov PS, Gelfand MS, Rodionov DA.

Front Microbiol. 2014 Jun 11;5:294. doi: 10.3389/fmicb.2014.00294. eCollection 2014.

PMID:
24966856
[PubMed]
Free PMC Article
2.

[Machine learning study of DNA binding by transcription factors from the LacI family].

Fedonin GG, Rakhmaninova AB, Korostelev IuD, Laĭkova ON, Gel'fand MS.

Mol Biol (Mosk). 2011 Jul-Aug;45(4):724-37. Russian.

PMID:
21954606
[PubMed - indexed for MEDLINE]
3.

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.

Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S3. doi: 10.1186/1471-2164-12-S1-S3.

PMID:
21810205
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Evolution of regulatory motifs of bacterial transcription factors.

Gorbunov KY, Laikova ON, Rodionov DA, Gelfand MS, Lyubetsky VA.

In Silico Biol. 2010;10(3):163-83. doi: 10.3233/ISB-2010-0425.

PMID:
22430290
[PubMed - indexed for MEDLINE]
5.

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.

Novichkov PS, Laikova ON, Novichkova ES, Gelfand MS, Arkin AP, Dubchak I, Rodionov DA.

Nucleic Acids Res. 2010 Jan;38(Database issue):D111-8. doi: 10.1093/nar/gkp894. Epub 2009 Nov 1.

PMID:
19884135
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

How gene order is influenced by the biophysics of transcription regulation.

Kolesov G, Wunderlich Z, Laikova ON, Gelfand MS, Mirny LA.

Proc Natl Acad Sci U S A. 2007 Aug 28;104(35):13948-53. Epub 2007 Aug 20.

PMID:
17709750
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis.

Yang C, Rodionov DA, Li X, Laikova ON, Gelfand MS, Zagnitko OP, Romine MF, Obraztsova AY, Nealson KH, Osterman AL.

J Biol Chem. 2006 Oct 6;281(40):29872-85. Epub 2006 Jul 20.

PMID:
16857666
[PubMed - indexed for MEDLINE]
Free Article
8.

[Computer analysis of regulating metabolism of glycerol-3-phosphate in proteobacteria genome].

Danilova LV, Gel'fand MS, Liubetskiĭ VA, Laĭkova ON.

Mol Biol (Mosk). 2003 Sep-Oct;37(5):843-9. Russian.

PMID:
14593921
[PubMed - indexed for MEDLINE]
9.

Computational analysis of the transcriptional regulation of pentose utilization systems in the gamma subdivision of Proteobacteria.

Laikova ON, Mironov AA, Gelfand MS.

FEMS Microbiol Lett. 2001 Dec 18;205(2):315-22.

PMID:
11750821
[PubMed - indexed for MEDLINE]

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