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Gut Microbiota Richness and Composition and Dietary Intake of Overweight Pregnant Women Are Related to Serum Zonulin Concentration, a Marker for Intestinal Permeability.

Mokkala K, Röytiö H, Munukka E, Pietilä S, Ekblad U, Rönnemaa T, Eerola E, Laiho A, Laitinen K.

J Nutr. 2016 Jul 27. pii: jn235358. [Epub ahead of print]


Epigenetic Silencing of the Key Antioxidant Enzyme Catalase in Karyotypically Abnormal Human Pluripotent Stem Cells.

Konki M, Pasumarthy K, Malonzo M, Sainio A, Valensisi C, Söderström M, Emani MR, Stubb A, Närvä E, Ghimire B, Laiho A, Järveläinen H, Lahesmaa R, Lähdesmäki H, Hawkins RD, Lund RJ.

Sci Rep. 2016 Feb 25;6:22190. doi: 10.1038/srep22190.


Retene causes multifunctional transcriptomic changes in the heart of rainbow trout (Oncorhynchus mykiss) embryos.

Vehniäinen ER, Bremer K, Scott JA, Junttila S, Laiho A, Gyenesei A, Hodson PV, Oikari AO.

Environ Toxicol Pharmacol. 2016 Jan;41:95-102. doi: 10.1016/j.etap.2015.11.015. Epub 2015 Nov 28.


IRF4 Deficiency Leads to Altered BCR Signalling Revealed by Enhanced PI3K Pathway, Decreased SHIP Expression and Defected Cytoskeletal Responses.

Budzyńska PM, Niemelä M, Sarapulov AV, Kyläniemi MK, Nera KP, Junttila S, Laiho A, Mattila PK, Alinikula J, Lassila O.

Scand J Immunol. 2015 Nov;82(5):418-28. doi: 10.1111/sji.12343.


Differential Promoter Methylation of Macrophage Genes Is Associated With Impaired Vascular Growth in Ischemic Muscles of Hyperlipidemic and Type 2 Diabetic Mice: Genome-Wide Promoter Methylation Study.

Babu M, Durga Devi T, Mäkinen P, Kaikkonen M, Lesch HP, Junttila S, Laiho A, Ghimire B, Gyenesei A, Ylä-Herttuala S.

Circ Res. 2015 Jul 17;117(3):289-99. doi: 10.1161/CIRCRESAHA.115.306424. Epub 2015 Jun 17.


Seasonal gene expression kinetics between diapause phases in Drosophila virilis group species and overwintering differences between diapausing and non-diapausing females.

Salminen TS, Vesala L, Laiho A, Merisalo M, Hoikkala A, Kankare M.

Sci Rep. 2015 Jun 11;5:11197. doi: 10.1038/srep11197.


Maternal diabetes induces changes in the umbilical cord gene expression.

Koskinen A, Lehtoranta L, Laiho A, Laine J, Kääpä P, Soukka H.

Placenta. 2015 Jul;36(7):767-74. doi: 10.1016/j.placenta.2015.04.004. Epub 2015 Apr 18.


Identification of Reproduction-Related Gene Polymorphisms Using Whole Transcriptome Sequencing in the Large White Pig Population.

Fischer D, Laiho A, Gyenesei A, Sironen A.

G3 (Bethesda). 2015 Apr 27;5(7):1351-60. doi: 10.1534/g3.115.018382.


How consistent are the transcriptome changes associated with cold acclimation in two species of the Drosophila virilis group?

Parker DJ, Vesala L, Ritchie MG, Laiho A, Hoikkala A, Kankare M.

Heredity (Edinb). 2015 Jul;115(1):13-21. doi: 10.1038/hdy.2015.6. Epub 2015 Feb 11.


A note on an exon-based strategy to identify differentially expressed genes in RNA-seq experiments.

Laiho A, Elo LL.

PLoS One. 2014 Dec 26;9(12):e115964. doi: 10.1371/journal.pone.0115964. eCollection 2014.


Gut microbiota as an epigenetic regulator: pilot study based on whole-genome methylation analysis.

Kumar H, Lund R, Laiho A, Lundelin K, Ley RE, Isolauri E, Salminen S.

MBio. 2014 Dec 16;5(6). pii: e02113-14. doi: 10.1128/mBio.02113-14.


Early dental epithelial transcription factors distinguish ameloblastoma from keratocystic odontogenic tumor.

Heikinheimo K, Kurppa KJ, Laiho A, Peltonen S, Berdal A, Bouattour A, Ruhin B, Catón J, Thesleff I, Leivo I, Morgan PR.

J Dent Res. 2015 Jan;94(1):101-11. doi: 10.1177/0022034514556815. Epub 2014 Nov 14.


Genome Sequence of Coxsackievirus A6, Isolated during a Hand-Foot-and-Mouth Disease Outbreak in Finland in 2008.

Osterback R, Koskinen S, Merilahti P, Pursiheimo JP, Blomqvist S, Roivainen M, Laiho A, Susi P, Waris M.

Genome Announc. 2014 Oct 16;2(5). pii: e01004-14. doi: 10.1128/genomeA.01004-14.


Fermentable fibres condition colon microbiota and promote diabetogenesis in NOD mice.

Toivonen RK, Emani R, Munukka E, Rintala A, Laiho A, Pietilä S, Pursiheimo JP, Soidinsalo P, Linhala M, Eerola E, Huovinen P, Hänninen A.

Diabetologia. 2014 Oct;57(10):2183-92. doi: 10.1007/s00125-014-3325-6. Epub 2014 Jul 17.


Promoter-specific alterations of APC are a rare cause for mutation-negative familial adenomatous polyposis.

Pavicic W, Nieminen TT, Gylling A, Pursiheimo JP, Laiho A, Gyenesei A, Järvinen HJ, Peltomäki P.

Genes Chromosomes Cancer. 2014 Oct;53(10):857-64. doi: 10.1002/gcc.22197. Epub 2014 Jun 20.


A recent L1 insertion within SPEF2 gene is associated with changes in PRLR expression in sow reproductive organs.

Sironen A, Fischer D, Laiho A, Gyenesei A, Vilkki J.

Anim Genet. 2014 Aug;45(4):500-7. doi: 10.1111/age.12153. Epub 2014 Apr 9.


Gene expression differences between Noccaea caerulescens ecotypes help to identify candidate genes for metal phytoremediation.

Halimaa P, Lin YF, Ahonen VH, Blande D, Clemens S, Gyenesei A, Häikiö E, Kärenlampi SO, Laiho A, Aarts MG, Pursiheimo JP, Schat H, Schmidt H, Tuomainen MH, Tervahauta AI.

Environ Sci Technol. 2014 Mar 18;48(6):3344-53. doi: 10.1021/es4042995. Epub 2014 Mar 6.


Diblock-copolymer-mediated self-assembly of protein-stabilized iron oxide nanoparticle clusters for magnetic resonance imaging.

Tähkä S, Laiho A, Kostiainen MA.

Chemistry. 2014 Mar 3;20(10):2718-22. doi: 10.1002/chem.201304070. Epub 2014 Feb 12.


Whole transcriptome characterization of the effects of dehydration and rehydration on Cladonia rangiferina, the grey reindeer lichen.

Junttila S, Laiho A, Gyenesei A, Rudd S.

BMC Genomics. 2013 Dec 10;14:870. doi: 10.1186/1471-2164-14-870.


Comparison of software packages for detecting differential expression in RNA-seq studies.

Seyednasrollah F, Laiho A, Elo LL.

Brief Bioinform. 2015 Jan;16(1):59-70. doi: 10.1093/bib/bbt086. Epub 2013 Dec 2.

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