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Items: 1 to 20 of 23


Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-independent High Throughput Sequencing: A Case Report.

Siddiqui H, Lagesen K, Nederbragt AJ, Eri LM, Jeansson SL, Jakobsen KS.

Open Microbiol J. 2014 Dec 31;8:148-53. doi: 10.2174/1874285801408010148. eCollection 2014.


Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment.

Xiao X, Sogge H, Lagesen K, Tooming-Klunderud A, Jakobsen KS, Rohrlack T.

PLoS One. 2014 Aug 29;9(8):e106510. doi: 10.1371/journal.pone.0106510. eCollection 2014.


Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response.

Booth JA, Thomassen GO, Rowe AD, Weel-Sneve R, Lagesen K, Kristiansen KI, Bjørås M, Rognes T, Lindvall JM.

Sci Rep. 2013 Oct 25;3:3053. doi: 10.1038/srep03053.


From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains.

Tooming-Klunderud A, Sogge H, Rounge TB, Nederbragt AJ, Lagesen K, Glöckner G, Hayes PK, Rohrlack T, Jakobsen KS.

Appl Environ Microbiol. 2013 Nov;79(21):6803-12. doi: 10.1128/AEM.01455-13. Epub 2013 Aug 30.


CMG-biotools, a free workbench for basic comparative microbial genomics.

Vesth T, Lagesen K, Acar Ö, Ussery D.

PLoS One. 2013;8(4):e60120. doi: 10.1371/journal.pone.0060120. Epub 2013 Apr 5.


Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche.

de Muinck EJ, Lagesen K, Afset JE, Didelot X, Rønningen KS, Rudi K, Stenseth NC, Trosvik P.

BMC Genomics. 2013 Feb 5;14:81. doi: 10.1186/1471-2164-14-81.


Alterations of microbiota in urine from women with interstitial cystitis.

Siddiqui H, Lagesen K, Nederbragt AJ, Jeansson SL, Jakobsen KS.

BMC Microbiol. 2012 Sep 13;12:205. doi: 10.1186/1471-2180-12-205.


Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli.

Snipen L, Wassenaar TM, Altermann E, Olson J, Kathariou S, Lagesen K, Takamiya M, Knøchel S, Ussery DW, Meinersmann RJ.

Microb Inform Exp. 2012 Aug 28;2(1):8. doi: 10.1186/2042-5783-2-8.


Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons.

Siddiqui H, Nederbragt AJ, Lagesen K, Jeansson SL, Jakobsen KS.

BMC Microbiol. 2011 Nov 2;11:244. doi: 10.1186/1471-2180-11-244.


The genome sequence of Atlantic cod reveals a unique immune system.

Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, Gregers TF, Rounge TB, Paulsen J, Solbakken MH, Sharma A, Wetten OF, Lanzén A, Winer R, Knight J, Vogel JH, Aken B, Andersen O, Lagesen K, Tooming-Klunderud A, Edvardsen RB, Tina KG, Espelund M, Nepal C, Previti C, Karlsen BO, Moum T, Skage M, Berg PR, Gjøen T, Kuhl H, Thorsen J, Malde K, Reinhardt R, Du L, Johansen SD, Searle S, Lien S, Nilsen F, Jonassen I, Omholt SW, Stenseth NC, Jakobsen KS.

Nature. 2011 Aug 10;477(7363):207-10. doi: 10.1038/nature10342.


Tiling array analysis of UV treated Escherichia coli predicts novel differentially expressed small peptides.

Thomassen GO, Weel-Sneve R, Rowe AD, Booth JA, Lindvall JM, Lagesen K, Kristiansen KI, Bjørås M, Rognes T.

PLoS One. 2010 Dec 23;5(12):e15356. doi: 10.1371/journal.pone.0015356.


Genomic characterization of Campylobacter jejuni strain M1.

Friis C, Wassenaar TM, Javed MA, Snipen L, Lagesen K, Hallin PF, Newell DG, Toszeghy M, Ridley A, Manning G, Ussery DW.

PLoS One. 2010 Aug 26;5(8):e12253. doi: 10.1371/journal.pone.0012253.


Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods.

Bohlin J, Snipen L, Cloeckaert A, Lagesen K, Ussery D, Kristoffersen AB, Godfroid J.

BMC Evol Biol. 2010 Aug 13;10:249. doi: 10.1186/1471-2148-10-249.


Analysis of intra-genomic GC content homogeneity within prokaryotes.

Bohlin J, Snipen L, Hardy SP, Kristoffersen AB, Lagesen K, Dønsvik T, Skjerve E, Ussery DW.

BMC Genomics. 2010 Aug 6;11:464. doi: 10.1186/1471-2164-11-464.


Genome update: the 1000th genome--a cautionary tale.

Lagesen K, Ussery DW, Wassenaar TM.

Microbiology. 2010 Mar;156(Pt 3):603-8. doi: 10.1099/mic.0.038257-0. Epub 2010 Jan 21.


On the origins of a Vibrio species.

Vesth T, Wassenaar TM, Hallin PF, Snipen L, Lagesen K, Ussery DW.

Microb Ecol. 2010 Jan;59(1):1-13. doi: 10.1007/s00248-009-9596-7.


The genus burkholderia: analysis of 56 genomic sequences.

Ussery DW, Kiil K, Lagesen K, Sicheritz-Pontén T, Bohlin J, Wassenaar TM.

Genome Dyn. 2009;6:140-57. doi: 10.1159/000235768. Epub 2009 Aug 19.


Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays.

Thomassen GO, Rowe AD, Lagesen K, Lindvall JM, Rognes T.

PLoS One. 2009 Jun 17;4(6):e5943. doi: 10.1371/journal.pone.0005943.


Genome dynamics in major bacterial pathogens.

Ambur OH, Davidsen T, Frye SA, Balasingham SV, Lagesen K, Rognes T, Tønjum T.

FEMS Microbiol Rev. 2009 May;33(3):453-70. Review.


RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW.

Nucleic Acids Res. 2007;35(9):3100-8. Epub 2007 Apr 22.

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