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Results: 1 to 20 of 21

1.

Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response.

Booth JA, Thomassen GO, Rowe AD, Weel-Sneve R, Lagesen K, Kristiansen KI, Bjørås M, Rognes T, Lindvall JM.

Sci Rep. 2013 Oct 25;3:3053. doi: 10.1038/srep03053.

PMID:
24157950
[PubMed - in process]
2.

From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains.

Tooming-Klunderud A, Sogge H, Rounge TB, Nederbragt AJ, Lagesen K, Glöckner G, Hayes PK, Rohrlack T, Jakobsen KS.

Appl Environ Microbiol. 2013 Nov;79(21):6803-12. doi: 10.1128/AEM.01455-13. Epub 2013 Aug 30.

PMID:
23995927
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

CMG-biotools, a free workbench for basic comparative microbial genomics.

Vesth T, Lagesen K, Acar Ö, Ussery D.

PLoS One. 2013;8(4):e60120. doi: 10.1371/journal.pone.0060120. Epub 2013 Apr 5.

PMID:
23577086
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche.

de Muinck EJ, Lagesen K, Afset JE, Didelot X, Rønningen KS, Rudi K, Stenseth NC, Trosvik P.

BMC Genomics. 2013 Feb 5;14:81. doi: 10.1186/1471-2164-14-81.

PMID:
23384204
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Alterations of microbiota in urine from women with interstitial cystitis.

Siddiqui H, Lagesen K, Nederbragt AJ, Jeansson SL, Jakobsen KS.

BMC Microbiol. 2012 Sep 13;12:205. doi: 10.1186/1471-2180-12-205.

PMID:
22974186
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli.

Snipen L, Wassenaar TM, Altermann E, Olson J, Kathariou S, Lagesen K, Takamiya M, Knøchel S, Ussery DW, Meinersmann RJ.

Microb Inform Exp. 2012 Aug 28;2(1):8. doi: 10.1186/2042-5783-2-8.

PMID:
22929701
[PubMed]
Free PMC Article
7.

Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons.

Siddiqui H, Nederbragt AJ, Lagesen K, Jeansson SL, Jakobsen KS.

BMC Microbiol. 2011 Nov 2;11:244. doi: 10.1186/1471-2180-11-244.

PMID:
22047020
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The genome sequence of Atlantic cod reveals a unique immune system.

Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, Gregers TF, Rounge TB, Paulsen J, Solbakken MH, Sharma A, Wetten OF, Lanzén A, Winer R, Knight J, Vogel JH, Aken B, Andersen O, Lagesen K, Tooming-Klunderud A, Edvardsen RB, Tina KG, Espelund M, Nepal C, Previti C, Karlsen BO, Moum T, Skage M, Berg PR, Gjøen T, Kuhl H, Thorsen J, Malde K, Reinhardt R, Du L, Johansen SD, Searle S, Lien S, Nilsen F, Jonassen I, Omholt SW, Stenseth NC, Jakobsen KS.

Nature. 2011 Aug 10;477(7363):207-10. doi: 10.1038/nature10342.

PMID:
21832995
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Tiling array analysis of UV treated Escherichia coli predicts novel differentially expressed small peptides.

Thomassen GO, Weel-Sneve R, Rowe AD, Booth JA, Lindvall JM, Lagesen K, Kristiansen KI, Bjørås M, Rognes T.

PLoS One. 2010 Dec 23;5(12):e15356. doi: 10.1371/journal.pone.0015356.

PMID:
21203457
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genomic characterization of Campylobacter jejuni strain M1.

Friis C, Wassenaar TM, Javed MA, Snipen L, Lagesen K, Hallin PF, Newell DG, Toszeghy M, Ridley A, Manning G, Ussery DW.

PLoS One. 2010 Aug 26;5(8):e12253. doi: 10.1371/journal.pone.0012253.

PMID:
20865039
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods.

Bohlin J, Snipen L, Cloeckaert A, Lagesen K, Ussery D, Kristoffersen AB, Godfroid J.

BMC Evol Biol. 2010 Aug 13;10:249. doi: 10.1186/1471-2148-10-249.

PMID:
20707916
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Analysis of intra-genomic GC content homogeneity within prokaryotes.

Bohlin J, Snipen L, Hardy SP, Kristoffersen AB, Lagesen K, Dønsvik T, Skjerve E, Ussery DW.

BMC Genomics. 2010 Aug 6;11:464. doi: 10.1186/1471-2164-11-464.

PMID:
20691090
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome update: the 1000th genome--a cautionary tale.

Lagesen K, Ussery DW, Wassenaar TM.

Microbiology. 2010 Mar;156(Pt 3):603-8. doi: 10.1099/mic.0.038257-0. Epub 2010 Jan 21.

PMID:
20093288
[PubMed - indexed for MEDLINE]
Free Article
14.

On the origins of a Vibrio species.

Vesth T, Wassenaar TM, Hallin PF, Snipen L, Lagesen K, Ussery DW.

Microb Ecol. 2010 Jan;59(1):1-13. doi: 10.1007/s00248-009-9596-7.

PMID:
19830476
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The genus burkholderia: analysis of 56 genomic sequences.

Ussery DW, Kiil K, Lagesen K, Sicheritz-Pontén T, Bohlin J, Wassenaar TM.

Genome Dyn. 2009;6:140-57. doi: 10.1159/000235768. Epub 2009 Aug 19.

PMID:
19696499
[PubMed - in process]
16.

Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays.

Thomassen GO, Rowe AD, Lagesen K, Lindvall JM, Rognes T.

PLoS One. 2009 Jun 17;4(6):e5943. doi: 10.1371/journal.pone.0005943.

PMID:
19536279
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genome dynamics in major bacterial pathogens.

Ambur OH, Davidsen T, Frye SA, Balasingham SV, Lagesen K, Rognes T, Tønjum T.

FEMS Microbiol Rev. 2009 May;33(3):453-70. Review.

PMID:
19396949
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW.

Nucleic Acids Res. 2007;35(9):3100-8. Epub 2007 Apr 22.

PMID:
17452365
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome update: tRNAs in sequenced microbial genomes.

Ussery DW, Hallin PF, Lagesen K, Wassenaar TM.

Microbiology. 2004 Jun;150(Pt 6):1603-6. No abstract available.

PMID:
15184546
[PubMed - indexed for MEDLINE]
Free Article
20.

Genome update: rRNAs in sequenced microbial genomes.

Ussery DW, Hallin PF, Lagesen K, Coenye T.

Microbiology. 2004 May;150(Pt 5):1113-5. No abstract available.

PMID:
15133066
[PubMed - indexed for MEDLINE]
Free Article

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