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Results: 1 to 20 of 31

1.

Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells.

Batagov AO, Yarmishyn AA, Jenjaroenpun P, Tan JZ, Nishida Y, Kurochkin IV.

BMC Syst Biol. 2013 Oct 16;7 Suppl 3:S11. doi: 10.1186/1752-0509-7-S3-S11.

PMID:
24555823
[PubMed - in process]
Free PMC Article
2.

Characterization of RNA in exosomes secreted by human breast cancer cell lines using next-generation sequencing.

Jenjaroenpun P, Kremenska Y, Nair VM, Kremenskoy M, Joseph B, Kurochkin IV.

PeerJ. 2013 Nov 5;1:e201. doi: 10.7717/peerj.201. eCollection 2013.

PMID:
24255815
[PubMed]
Free PMC Article
3.

Exosomes secreted by human cells transport largely mRNA fragments that are enriched in the 3'-untranslated regions.

Batagov AO, Kurochkin IV.

Biol Direct. 2013 Jun 7;8:12. doi: 10.1186/1745-6150-8-12.

PMID:
23758897
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Tysnd1 deficiency in mice interferes with the peroxisomal localization of PTS2 enzymes, causing lipid metabolic abnormalities and male infertility.

Mizuno Y, Ninomiya Y, Nakachi Y, Iseki M, Iwasa H, Akita M, Tsukui T, Shimozawa N, Ito C, Toshimori K, Nishimukai M, Hara H, Maeba R, Okazaki T, Alodaib AN, Al Amoudi M, Jacob M, Alkuraya FS, Horai Y, Watanabe M, Motegi H, Wakana S, Noda T, Kurochkin IV, Mizuno Y, Schönbach C, Okazaki Y.

PLoS Genet. 2013;9(2):e1003286. doi: 10.1371/journal.pgen.1003286. Epub 2013 Feb 14.

PMID:
23459139
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

ALEX1 suppresses colony formation ability of human colorectal carcinoma cell lines.

Iseki H, Takeda A, Andoh T, Kuwabara K, Takahashi N, Kurochkin IV, Ishida H, Okazaki Y, Koyama I.

Cancer Sci. 2012 Jul;103(7):1267-71. doi: 10.1111/j.1349-7006.2012.02300.x. Epub 2012 May 17.

PMID:
22494058
[PubMed - indexed for MEDLINE]
6.

Identification of nucleotide patterns enriched in secreted RNAs as putative cis-acting elements targeting them to exosome nano-vesicles.

Batagov AO, Kuznetsov VA, Kurochkin IV.

BMC Genomics. 2011 Nov 30;12 Suppl 3:S18. doi: 10.1186/1471-2164-12-S3-S18. Epub 2011 Nov 30.

PMID:
22369587
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Human Arm protein lost in epithelial cancers, on chromosome X 1 (ALEX1) gene is transcriptionally regulated by CREB and Wnt/beta-catenin signaling.

Iseki H, Takeda A, Andoh T, Takahashi N, Kurochkin IV, Yarmishyn A, Shimada H, Okazaki Y, Koyama I.

Cancer Sci. 2010 Jun;101(6):1361-6. doi: 10.1111/j.1349-7006.2010.01541.x. Epub 2010 Feb 24.

PMID:
20398052
[PubMed - indexed for MEDLINE]
8.

Predicted mouse peroxisome-targeted proteins and their actual subcellular locations.

Mizuno Y, Kurochkin IV, Herberth M, Okazaki Y, Schönbach C.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S16. doi: 10.1186/1471-2105-9-S12-S16.

PMID:
19091015
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Novel peroxisomal protease Tysnd1 processes PTS1- and PTS2-containing enzymes involved in beta-oxidation of fatty acids.

Kurochkin IV, Mizuno Y, Konagaya A, Sakaki Y, Schönbach C, Okazaki Y.

EMBO J. 2007 Feb 7;26(3):835-45. Epub 2007 Jan 25.

PMID:
17255948
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The transcriptional landscape of the mammalian genome.

Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schönbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y; FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group).

Science. 2005 Sep 2;309(5740):1559-63. Erratum in: Science. 2006 Mar 24;311(5768):1713.

PMID:
16141072
[PubMed - indexed for MEDLINE]
Free Article
11.

Sequence-based discovery of the human and rodent peroxisomal proteome.

Kurochkin IV, Nagashima T, Konagaya A, Schönbach C.

Appl Bioinformatics. 2005;4(2):93-104.

PMID:
16128611
[PubMed - indexed for MEDLINE]
12.

Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS.

Nagashima T, Silva DG, Petrovsky N, Socha LA, Suzuki H, Saito R, Kasukawa T, Kurochkin IV, Konagaya A, Schönbach C.

Genome Res. 2003 Jun;13(6B):1520-33.

PMID:
12819151
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.

Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schönbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y; FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I & II Team.

Nature. 2002 Dec 5;420(6915):563-73.

PMID:
12466851
[PubMed - indexed for MEDLINE]
14.

Insulin-degrading enzyme: embarking on amyloid destruction.

Kurochkin IV.

Trends Biochem Sci. 2001 Jul;26(7):421-5.

PMID:
11440853
[PubMed - indexed for MEDLINE]
15.

Insulin-degrading enzyme exists inside of rat liver peroxisomes and degrades oxidized proteins.

Morita M, Kurochkin IV, Motojima K, Goto S, Takano T, Okamura S, Sato R, Yokota S, Imanaka T.

Cell Struct Funct. 2000 Oct;25(5):309-15.

PMID:
11235899
[PubMed - indexed for MEDLINE]
Free Article
16.

ALEX1, a novel human armadillo repeat protein that is expressed differentially in normal tissues and carcinomas.

Kurochkin IV, Yonemitsu N, Funahashi SI, Nomura H.

Biochem Biophys Res Commun. 2001 Jan 12;280(1):340-7.

PMID:
11162520
[PubMed - indexed for MEDLINE]
17.

Amyloidogenic determinant as a substrate recognition motif of insulin-degrading enzyme.

Kurochkin IV.

FEBS Lett. 1998 May 8;427(2):153-6.

PMID:
9607302
[PubMed - indexed for MEDLINE]
Free Article
18.

Domain structure, stability and domain-domain interactions in recombinant factor XIII.

Kurochkin IV, Procyk R, Bishop PD, Yee VC, Teller DC, Ingham KC, Medved LV.

J Mol Biol. 1995 Apr 28;248(2):414-30.

PMID:
7739050
[PubMed - indexed for MEDLINE]
19.

Alzheimer's beta-amyloid peptide specifically interacts with and is degraded by insulin degrading enzyme.

Kurochkin IV, Goto S.

FEBS Lett. 1994 May 23;345(1):33-7.

PMID:
8194595
[PubMed - indexed for MEDLINE]
Free Article
20.

[Isolation and characteristics of functionally active proteolytically modified forms of tyrosyl-tRNA synthetase from bovine liver].

Gnatenko DV, Korneliuk AI, Kurochkin IV, Ribkinska TA, Matsuka GKh.

Ukr Biokhim Zh. 1991 Jul-Aug;63(4):61-7. Russian.

PMID:
1949232
[PubMed - indexed for MEDLINE]

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