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Results: 1 to 20 of 60

1.

Evolution of the vertebrate pax4/6 class of genes with focus on its novel member, the pax10 gene.

Feiner N, Meyer A, Kuraku S.

Genome Biol Evol. 2014 Jun 19;6(7):1635-51. doi: 10.1093/gbe/evu135.

PMID:
24951566
[PubMed - in process]
Free Article
2.

Saltatory evolution of the ectodermal neural cortex gene family at the vertebrate origin.

Feiner N, Murakami Y, Breithut L, Mazan S, Meyer A, Kuraku S.

Genome Biol Evol. 2013;5(8):1485-502. doi: 10.1093/gbe/evt104.

PMID:
23843192
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Revealing less derived nature of cartilaginous fish genomes with their evolutionary time scale inferred with nuclear genes.

Renz AJ, Meyer A, Kuraku S.

PLoS One. 2013 Jun 25;8(6):e66400. doi: 10.1371/journal.pone.0066400. Print 2013.

PMID:
23825540
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Developmental expression and evolution of muscle-specific microRNAs conserved in vertebrates.

Tani S, Kuraku S, Sakamoto H, Inoue K, Kusakabe R.

Evol Dev. 2013 Jul-Aug;15(4):293-304. doi: 10.1111/ede.12039.

PMID:
23809703
[PubMed - indexed for MEDLINE]
5.

aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity.

Kuraku S, Zmasek CM, Nishimura O, Katoh K.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W22-8. doi: 10.1093/nar/gkt389. Epub 2013 May 15.

PMID:
23677614
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan.

Wang Z, Pascual-Anaya J, Zadissa A, Li W, Niimura Y, Huang Z, Li C, White S, Xiong Z, Fang D, Wang B, Ming Y, Chen Y, Zheng Y, Kuraku S, Pignatelli M, Herrero J, Beal K, Nozawa M, Li Q, Wang J, Zhang H, Yu L, Shigenobu S, Wang J, Liu J, Flicek P, Searle S, Wang J, Kuratani S, Yin Y, Aken B, Zhang G, Irie N.

Nat Genet. 2013 Jun;45(6):701-6. doi: 10.1038/ng.2615. Epub 2013 Apr 28.

PMID:
23624526
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Homeogenetic inductive mechanism of segmentation in polychaete tail regeneration.

Niwa N, Akimoto-Kato A, Sakuma M, Kuraku S, Hayashi S.

Dev Biol. 2013 Sep 15;381(2):460-70. doi: 10.1016/j.ydbio.2013.04.010. Epub 2013 Apr 20.

PMID:
23608458
[PubMed - indexed for MEDLINE]
Free Article
8.

The African coelacanth genome provides insights into tetrapod evolution.

Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, Gerdol M, Aken B, Biscotti MA, Barucca M, Baurain D, Berlin AM, Blatch GL, Buonocore F, Burmester T, Campbell MS, Canapa A, Cannon JP, Christoffels A, De Moro G, Edkins AL, Fan L, Fausto AM, Feiner N, Forconi M, Gamieldien J, Gnerre S, Gnirke A, Goldstone JV, Haerty W, Hahn ME, Hesse U, Hoffmann S, Johnson J, Karchner SI, Kuraku S, Lara M, Levin JZ, Litman GW, Mauceli E, Miyake T, Mueller MG, Nelson DR, Nitsche A, Olmo E, Ota T, Pallavicini A, Panji S, Picone B, Ponting CP, Prohaska SJ, Przybylski D, Saha NR, Ravi V, Ribeiro FJ, Sauka-Spengler T, Scapigliati G, Searle SM, Sharpe T, Simakov O, Stadler PF, Stegeman JJ, Sumiyama K, Tabbaa D, Tafer H, Turner-Maier J, van Heusden P, White S, Williams L, Yandell M, Brinkmann H, Volff JN, Tabin CJ, Shubin N, Schartl M, Jaffe DB, Postlethwait JH, Venkatesh B, Di Palma F, Lander ES, Meyer A, Lindblad-Toh K.

Nature. 2013 Apr 18;496(7445):311-6. doi: 10.1038/nature12027.

PMID:
23598338
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution.

Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SM, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson YW, Nanlohy KG, Libants SV, Yeh CY, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, de Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner ME, Warren WC, Clifton SW, Wilson RK, Li W.

Nat Genet. 2013 Apr;45(4):415-21, 421e1-2. doi: 10.1038/ng.2568. Epub 2013 Feb 24.

PMID:
23435085
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Non-parsimonious evolution of hagfish Dlx genes.

Fujimoto S, Oisi Y, Kuraku S, Ota KG, Kuratani S.

BMC Evol Biol. 2013 Jan 19;13:15. doi: 10.1186/1471-2148-13-15.

PMID:
23331926
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Impact of asymmetric gene repertoire between cyclostomes and gnathostomes.

Kuraku S.

Semin Cell Dev Biol. 2013 Feb;24(2):119-27. doi: 10.1016/j.semcdb.2012.12.009. Epub 2013 Jan 3. Review.

PMID:
23291292
[PubMed - indexed for MEDLINE]
Free Article
12.

The Dlx genes as clues to vertebrate genomics and craniofacial evolution.

Takechi M, Adachi N, Hirai T, Kuratani S, Kuraku S.

Semin Cell Dev Biol. 2013 Feb;24(2):110-8. doi: 10.1016/j.semcdb.2012.12.010. Epub 2013 Jan 3. Review.

PMID:
23291259
[PubMed - indexed for MEDLINE]
13.

Craniofacial development of hagfishes and the evolution of vertebrates.

Oisi Y, Ota KG, Kuraku S, Fujimoto S, Kuratani S.

Nature. 2013 Jan 10;493(7431):175-80. doi: 10.1038/nature11794. Epub 2012 Dec 19.

PMID:
23254938
[PubMed - indexed for MEDLINE]
14.

Cloning and pharmacological characterization of the neuropeptide Y receptor Y5 in the sea lamprey, Petromyzon marinus.

Xu B, Sundström G, Kuraku S, Lundell I, Larhammar D.

Peptides. 2013 Jan;39:64-70. doi: 10.1016/j.peptides.2012.11.007. Epub 2012 Nov 23.

PMID:
23178200
[PubMed - indexed for MEDLINE]
15.

Intra-genomic GC heterogeneity in sauropsids: evolutionary insights from cDNA mapping and GC(3) profiling in snake.

Matsubara K, Kuraku S, Tarui H, Nishimura O, Nishida C, Agata K, Kumazawa Y, Matsuda Y.

BMC Genomics. 2012 Nov 9;13:604. doi: 10.1186/1471-2164-13-604.

PMID:
23140509
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Split-Doa10: a naturally split polytopic eukaryotic membrane protein generated by fission of a nuclear gene.

Stuerner E, Kuraku S, Hochstrasser M, Kreft SG.

PLoS One. 2012;7(10):e45194. doi: 10.1371/journal.pone.0045194. Epub 2012 Oct 4.

PMID:
23071509
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Co-orthology of Pax4 and Pax6 to the fly eyeless gene: molecular phylogenetic, comparative genomic, and embryological analyses.

Manousaki T, Feiner N, Begemann G, Meyer A, Kuraku S.

Evol Dev. 2011 Sep-Oct;13(5):448-59. doi: 10.1111/j.1525-142X.2011.00502.x.

PMID:
23016906
[PubMed - indexed for MEDLINE]
18.

Pax2 modulates proliferation during specification of the otic and epibranchial placodes.

Freter S, Muta Y, O'Neill P, Vassilev VS, Kuraku S, Ladher RK.

Dev Dyn. 2012 Nov;241(11):1716-28. doi: 10.1002/dvdy.23856. Epub 2012 Sep 25.

PMID:
22972769
[PubMed - indexed for MEDLINE]
Free Article
19.

Horizontal transfers of Tc1 elements between teleost fishes and their vertebrate parasites, lampreys.

Kuraku S, Qiu H, Meyer A.

Genome Biol Evol. 2012;4(9):929-36. doi: 10.1093/gbe/evs069. Epub 2012 Aug 9.

PMID:
22887124
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Detection and phylogenetic assessment of conserved synteny derived from whole genome duplications.

Kuraku S, Meyer A.

Methods Mol Biol. 2012;855:385-95. doi: 10.1007/978-1-61779-582-4_14. Review.

PMID:
22407717
[PubMed - indexed for MEDLINE]

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