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Results: 19

1.

MIRPIPE: quantification of microRNAs in niche model organisms.

Kuenne C, Preussner J, Herzog M, Braun T, Looso M.

Bioinformatics. 2014 Dec 1;30(23):3412-3. doi: 10.1093/bioinformatics/btu573. Epub 2014 Aug 26.

2.

Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431.

Fritzenwanker M, Kuenne C, Billion A, Hain T, Zimmermann K, Goesmann A, Chakraborty T, Domann E.

Genome Announc. 2013 Jan;1(1). pii: e00165-12. doi: 10.1128/genomeA.00165-12. Epub 2013 Feb 7.

3.

Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome.

Kuenne C, Billion A, Mraheil MA, Strittmatter A, Daniel R, Goesmann A, Barbuddhe S, Hain T, Chakraborty T.

BMC Genomics. 2013 Jan 22;14:47. doi: 10.1186/1471-2164-14-47.

4.

Complete genome sequence of the porcine isolate Enterococcus faecalis D32.

Zischka M, Kuenne C, Blom J, Dabrowski PW, Linke B, Hain T, Nitsche A, Goesmann A, Larsen J, Jensen LB, Witte W, Werner G.

J Bacteriol. 2012 Oct;194(19):5490-1. doi: 10.1128/JB.01298-12.

5.

sRNAdb: a small non-coding RNA database for gram-positive bacteria.

Pischimarov J, Kuenne C, Billion A, Hemberger J, Cemič F, Chakraborty T, Hain T.

BMC Genomics. 2012 Aug 10;13:384. doi: 10.1186/1471-2164-13-384.

6.

Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes.

Hain T, Ghai R, Billion A, Kuenne CT, Steinweg C, Izar B, Mohamed W, Mraheil MA, Domann E, Schaffrath S, Kärst U, Goesmann A, Oehm S, Pühler A, Merkl R, Vorwerk S, Glaser P, Garrido P, Rusniok C, Buchrieser C, Goebel W, Chakraborty T.

BMC Genomics. 2012 Apr 24;13:144. doi: 10.1186/1471-2164-13-144.

7.

Genome-wide identification of small RNAs in the opportunistic pathogen Enterococcus faecalis V583.

Shioya K, Michaux C, Kuenne C, Hain T, Verneuil N, Budin-Verneuil A, Hartsch T, Hartke A, Giard JC.

PLoS One. 2011;6(9):e23948. doi: 10.1371/journal.pone.0023948. Epub 2011 Sep 2.

8.

Highly specific and quick detection of Mycobacterium avium subsp. paratuberculosis in feces and gut tissue of cattle and humans by multiple real-time PCR assays.

Imirzalioglu C, Dahmen H, Hain T, Billion A, Kuenne C, Chakraborty T, Domann E.

J Clin Microbiol. 2011 May;49(5):1843-52. doi: 10.1128/JCM.01492-10. Epub 2011 Mar 23.

9.

The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages.

Mraheil MA, Billion A, Mohamed W, Mukherjee K, Kuenne C, Pischimarov J, Krawitz C, Retey J, Hartsch T, Chakraborty T, Hain T.

Nucleic Acids Res. 2011 May;39(10):4235-48. doi: 10.1093/nar/gkr033. Epub 2011 Jan 29.

10.

Comparative genome-wide analysis of small RNAs of major Gram-positive pathogens: from identification to application.

Mraheil MA, Billion A, Kuenne C, Pischimarov J, Kreikemeyer B, Engelmann S, Hartke A, Giard JC, Rupnik M, Vorwerk S, Beier M, Retey J, Hartsch T, Jacob A, Cemič F, Hemberger J, Chakraborty T, Hain T.

Microb Biotechnol. 2010 Nov;3(6):658-76. doi: 10.1111/j.1751-7915.2010.00171.x. Review.

11.

Comparative analysis of plasmids in the genus Listeria.

Kuenne C, Voget S, Pischimarov J, Oehm S, Goesmann A, Daniel R, Hain T, Chakraborty T.

PLoS One. 2010 Sep 2;5(9). pii: e12511. doi: 10.1371/journal.pone.0012511.

12.

Complete genome sequence of Listeria seeligeri, a nonpathogenic member of the genus Listeria.

Steinweg C, Kuenne CT, Billion A, Mraheil MA, Domann E, Ghai R, Barbuddhe SB, Kärst U, Goesmann A, Pühler A, Weisshaar B, Wehland J, Lampidis R, Kreft J, Goebel W, Chakraborty T, Hain T.

J Bacteriol. 2010 Mar;192(5):1473-4. doi: 10.1128/JB.01415-09. Epub 2010 Jan 8.

13.

Temporal transcriptomic analysis of the Listeria monocytogenes EGD-e sigmaB regulon.

Hain T, Hossain H, Chatterjee SS, Machata S, Volk U, Wagner S, Brors B, Haas S, Kuenne CT, Billion A, Otten S, Pane-Farre J, Engelmann S, Chakraborty T.

BMC Microbiol. 2008 Jan 28;8:20. doi: 10.1186/1471-2180-8-20.

14.

Pathogenomics of Listeria spp.

Hain T, Chatterjee SS, Ghai R, Kuenne CT, Billion A, Steinweg C, Domann E, Kärst U, Jänsch L, Wehland J, Eisenreich W, Bacher A, Joseph B, Schär J, Kreft J, Klumpp J, Loessner MJ, Dorscht J, Neuhaus K, Fuchs TM, Scherer S, Doumith M, Jacquet C, Martin P, Cossart P, Rusniock C, Glaser P, Buchrieser C, Goebel W, Chakraborty T.

Int J Med Microbiol. 2007 Nov;297(7-8):541-57. Epub 2007 May 7. Review.

PMID:
17482873
15.

Comparative genomic analysis for the presence of potential enterococcal virulence factors in the probiotic Enterococcus faecalis strain Symbioflor 1.

Domann E, Hain T, Ghai R, Billion A, Kuenne C, Zimmermann K, Chakraborty T.

Int J Med Microbiol. 2007 Nov;297(7-8):533-9. Epub 2007 Apr 27.

PMID:
17466591
16.

GECO--linear visualization for comparative genomics.

Kuenne CT, Ghai R, Chakraborty T, Hain T.

Bioinformatics. 2007 Jan 1;23(1):125-6. Epub 2006 Oct 31.

17.

Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes.

Hain T, Steinweg C, Kuenne CT, Billion A, Ghai R, Chatterjee SS, Domann E, Kärst U, Goesmann A, Bekel T, Bartels D, Kaiser O, Meyer F, Pühler A, Weisshaar B, Wehland J, Liang C, Dandekar T, Lampidis R, Kreft J, Goebel W, Chakraborty T.

J Bacteriol. 2006 Nov;188(21):7405-15. Epub 2006 Aug 25.

18.

Intracellular gene expression profile of Listeria monocytogenes.

Chatterjee SS, Hossain H, Otten S, Kuenne C, Kuchmina K, Machata S, Domann E, Chakraborty T, Hain T.

Infect Immun. 2006 Feb;74(2):1323-38.

19.

Use of market segmentation to identify untapped consumer needs in vision correction surgery for future growth.

Loarie TM, Applegate D, Kuenne CB, Choi LJ, Horowitz DP.

J Refract Surg. 2003 Sep-Oct;19(5):566-76.

PMID:
14518746
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