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Results: 1 to 20 of 58

1.

Temperature dependence of C-terminal carboxylic group IR absorptions in the amide I' region.

Anderson BA, Literati A, Ball B, Kubelka J.

Spectrochim Acta A Mol Biomol Spectrosc. 2015 Jan 5;134:473-83. doi: 10.1016/j.saa.2014.06.102. Epub 2014 Jun 24.

PMID:
25036456
[PubMed - in process]
2.

The N-terminal domain allosterically regulates cleavage and activation of the epithelial sodium channel.

Kota P, Buchner G, Chakraborty H, Dang YL, He H, Garcia GJ, Kubelka J, Gentzsch M, Stutts MJ, Dokholyan NV.

J Biol Chem. 2014 Aug 15;289(33):23029-42. doi: 10.1074/jbc.M114.570952. Epub 2014 Jun 28.

PMID:
24973914
[PubMed - indexed for MEDLINE]
3.

Site-specific thermodynamic stability and unfolding of a de novo designed protein structural motif mapped by 13C isotopically edited IR spectroscopy.

Kubelka GS, Kubelka J.

J Am Chem Soc. 2014 Apr 23;136(16):6037-48. doi: 10.1021/ja500918k. Epub 2014 Apr 15.

PMID:
24684597
[PubMed - in process]
4.

Supramolecular ssDNA templated porphyrin and metalloporphyrin nanoassemblies with tunable helicity.

Sargsyan G, Leonard BM, Kubelka J, Balaz M.

Chemistry. 2014 Feb 10;20(7):1878-92. doi: 10.1002/chem.201304153. Epub 2014 Jan 23.

PMID:
24458504
[PubMed - indexed for MEDLINE]
5.

Ligand induced circular dichroism and circularly polarized luminescence in CdSe quantum dots.

Tohgha U, Deol KK, Porter AG, Bartko SG, Choi JK, Leonard BM, Varga K, Kubelka J, Muller G, Balaz M.

ACS Nano. 2013 Dec 23;7(12):11094-102. doi: 10.1021/nn404832f. Epub 2013 Nov 13.

PMID:
24200288
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Temperature dependence of amino acid side chain IR absorptions in the amide I' region.

Anderson BA, Literati A, Ball B, Kubelka J.

Biopolymers. 2014 May;101(5):536-48. doi: 10.1002/bip.22416.

PMID:
24122549
[PubMed - in process]
7.

Insight into the packing pattern of β2 fibrils: a model study of glutamic acid rich oligomers with 13C isotopic edited vibrational spectroscopy.

Chi H, Welch WR, Kubelka J, Keiderling TA.

Biomacromolecules. 2013 Nov 11;14(11):3880-91. doi: 10.1021/bm401015f. Epub 2013 Oct 9.

PMID:
24053614
[PubMed - indexed for MEDLINE]
8.

Multivariate analysis of spectral data with frequency shifts: application to temperature dependent infrared spectra of peptides and proteins.

Kubelka J.

Anal Chem. 2013 Oct 15;85(20):9588-95. doi: 10.1021/ac402083p. Epub 2013 Sep 26.

PMID:
24028416
[PubMed - indexed for MEDLINE]
9.

Infrared, vibrational circular dichroism, and Raman spectral simulations for β-sheet structures with various isotopic labels, interstrand, and stacking arrangements using density functional theory.

Welch WR, Kubelka J, Keiderling TA.

J Phys Chem B. 2013 Sep 12;117(36):10343-58. doi: 10.1021/jp4056126. Epub 2013 Aug 27.

PMID:
23924300
[PubMed - indexed for MEDLINE]
10.

Structural analyses of experimental 13C edited amide I' IR and VCD for peptide β-sheet aggregates and fibrils using DFT-based spectral simulations.

Welch WR, Keiderling TA, Kubelka J.

J Phys Chem B. 2013 Sep 12;117(36):10359-69. doi: 10.1021/jp405613r. Epub 2013 Aug 27.

PMID:
23924239
[PubMed - indexed for MEDLINE]
11.

Effect of asphaltene structure on association and aggregation using molecular dynamics.

Sedghi M, Goual L, Welch W, Kubelka J.

J Phys Chem B. 2013 May 9;117(18):5765-76. doi: 10.1021/jp401584u. Epub 2013 Apr 30.

PMID:
23581711
[PubMed - indexed for MEDLINE]
12.

T1BT* structural study of an anti-plasmodial peptide through NMR and molecular dynamics.

Topchiy E, Armstrong GS, Boswell KI, Buchner GS, Kubelka J, Lehmann TE.

Malar J. 2013 Mar 18;12:104. doi: 10.1186/1475-2875-12-104.

PMID:
23506240
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Formation and helicity control of ssDNA templated porphyrin nanoassemblies.

Sargsyan G, Schatz AA, Kubelka J, Balaz M.

Chem Commun (Camb). 2013 Feb 1;49(10):1020-2. doi: 10.1039/c2cc38150h. Epub 2012 Dec 21.

PMID:
23258275
[PubMed - indexed for MEDLINE]
14.

DFT-based simulations of amide I' IR spectra of a small protein in solution using empirical electrostatic map with a continuum solvent model.

Welch WR, Kubelka J.

J Phys Chem B. 2012 Sep 6;116(35):10739-47. doi: 10.1021/jp305387x. Epub 2012 Aug 28.

PMID:
22891757
[PubMed - indexed for MEDLINE]
15.

Unusual cold denaturation of a small protein domain.

Buchner GS, Shih N, Reece AE, Niebling S, Kubelka J.

Biochemistry. 2012 Aug 21;51(33):6496-8. doi: 10.1021/bi300916v. Epub 2012 Aug 7.

PMID:
22871296
[PubMed - indexed for MEDLINE]
16.

Isotope-edited infrared spectroscopy.

Buchner GS, Kubelka J.

Methods Mol Biol. 2012;895:347-58. doi: 10.1007/978-1-61779-927-3_20.

PMID:
22760327
[PubMed - indexed for MEDLINE]
17.

A phylogenetic analysis of normal modes evolution in enzymes and its relationship to enzyme function.

Lai J, Jin J, Kubelka J, Liberles DA.

J Mol Biol. 2012 Sep 21;422(3):442-59. doi: 10.1016/j.jmb.2012.05.028. Epub 2012 May 28. Erratum in: J Mol Biol. 2013 Aug 23;425(16):3019-23.

PMID:
22651983
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Biophysical and structural considerations for protein sequence evolution.

Grahnen JA, Nandakumar P, Kubelka J, Liberles DA.

BMC Evol Biol. 2011 Dec 16;11:361. doi: 10.1186/1471-2148-11-361.

PMID:
22171550
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Temperature effects on the optical path length of infrared liquid transmission cells.

Amunson KE, Anderson BA, Kubelka J.

Appl Spectrosc. 2011 Nov;65(11):1307-13. doi: 10.1366/11-06405.

PMID:
22054091
[PubMed]
20.

Fast side chain replacement in proteins using a coarse-grained approach for evaluating the effects of mutation during evolution.

Grahnen JA, Kubelka J, Liberles DA.

J Mol Evol. 2011 Aug;73(1-2):23-33. doi: 10.1007/s00239-011-9454-3. Epub 2011 Jul 29.

PMID:
21800121
[PubMed - indexed for MEDLINE]
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