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Results: 1 to 20 of 26

1.

Quartet Inference from SNP Data Under the Coalescent Model.

Chifman J, Kubatko L.

Bioinformatics. 2014 Aug 7. pii: btu530. [Epub ahead of print]

PMID:
25104814
[PubMed - as supplied by publisher]
2.

The effects of locus number, genetic divergence, and genotyping error on the utility of dominant markers for hybrid identification.

Sovic MG, Kubatko LS, Fuerst PA.

Ecol Evol. 2014 Feb;4(4):462-73. doi: 10.1002/ece3.833. Epub 2014 Jan 22.

PMID:
24634730
[PubMed]
Free PMC Article
3.

Gene tree rooting methods give distributions that mimic the coalescent process.

Tian Y, Kubatko LS.

Mol Phylogenet Evol. 2014 Jan;70:63-9. doi: 10.1016/j.ympev.2013.09.004. Epub 2013 Sep 18.

PMID:
24055603
[PubMed - in process]
4.

Using ancestral information to detect and localize quantitative trait loci in genome-wide association studies.

Thompson KL, Kubatko LS.

BMC Bioinformatics. 2013 Jun 20;14:200. doi: 10.1186/1471-2105-14-200.

PMID:
23786262
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Effects of missing data on species tree estimation under the coalescent.

Hovmöller R, Knowles LL, Kubatko LS.

Mol Phylogenet Evol. 2013 Dec;69(3):1057-62. doi: 10.1016/j.ympev.2013.06.004. Epub 2013 Jun 13.

PMID:
23769751
[PubMed - indexed for MEDLINE]
6.

Monte Carlo estimation of total variation distance of Markov chains on large spaces, with application to phylogenetics.

Herbei R, Kubatko L.

Stat Appl Genet Mol Biol. 2013 Mar 26;12(1):39-48. doi: 10.1515/sagmb-2012-0023.

PMID:
23459470
[PubMed - indexed for MEDLINE]
7.

Letter to the editor on the article entitled "Estimating species trees using Approximate Bayesian Computation" (Fan and Kubatko, Mol. Phylogenetics Evol. 59, 354-363).

Kubatko LS, Fan HH.

Mol Phylogenet Evol. 2013 Jan;66(1):438-9. doi: 10.1016/j.ympev.2012.10.003. Epub 2012 Oct 10. No abstract available.

PMID:
23063884
[PubMed - indexed for MEDLINE]
8.

Species delimitation and global biosecurity.

Boykin LM, Armstrong KF, Kubatko L, De Barro P.

Evol Bioinform Online. 2012;8:1-37. doi: 10.4137/EBO.S8532. Epub 2011 Dec 8.

PMID:
22267902
[PubMed]
Free PMC Article
9.

Estimating hybridization in the presence of coalescence using phylogenetic intraspecific sampling.

Gerard D, Gibbs HL, Kubatko L.

BMC Evol Biol. 2011 Oct 6;11:291. doi: 10.1186/1471-2148-11-291.

PMID:
21978073
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Evolution. Seeing the trees in your terrace.

Kubatko LS, Pearl DK.

Science. 2011 Jul 22;333(6041):411-2. doi: 10.1126/science.1209690. No abstract available.

PMID:
21778387
[PubMed - indexed for MEDLINE]
11.

Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys.

Roos C, Zinner D, Kubatko LS, Schwarz C, Yang M, Meyer D, Nash SD, Xing J, Batzer MA, Brameier M, Leendertz FH, Ziegler T, Perwitasari-Farajallah D, Nadler T, Walter L, Osterholz M.

BMC Evol Biol. 2011 Mar 24;11:77. doi: 10.1186/1471-2148-11-77.

PMID:
21435245
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Estimating species trees using approximate Bayesian computation.

Fan HH, Kubatko LS.

Mol Phylogenet Evol. 2011 May;59(2):354-63. doi: 10.1016/j.ympev.2011.02.019. Epub 2011 Mar 21.

PMID:
21397706
[PubMed - indexed for MEDLINE]
13.

Inferring species-level phylogenies and taxonomic distinctiveness using multilocus data in Sistrurus rattlesnakes.

Kubatko LS, Gibbs HL, Bloomquist EW.

Syst Biol. 2011 Jul;60(4):393-409. doi: 10.1093/sysbio/syr011. Epub 2011 Mar 9.

PMID:
21389297
[PubMed - indexed for MEDLINE]
14.

More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure.

Stone AC, Battistuzzi FU, Kubatko LS, Perry GH Jr, Trudeau E, Lin H, Kumar S.

Philos Trans R Soc Lond B Biol Sci. 2010 Oct 27;365(1556):3277-88. doi: 10.1098/rstb.2010.0096.

PMID:
20855302
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods.

Huang H, He Q, Kubatko LS, Knowles LL.

Syst Biol. 2010 Oct;59(5):573-83. doi: 10.1093/sysbio/syq047. Epub 2010 Sep 10.

PMID:
20833951
[PubMed - indexed for MEDLINE]
16.

Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling.

Hird S, Kubatko L, Carstens B.

Mol Phylogenet Evol. 2010 Nov;57(2):888-98. doi: 10.1016/j.ympev.2010.08.006. Epub 2010 Aug 19.

PMID:
20727977
[PubMed - indexed for MEDLINE]
17.

Identifying hybridization events in the presence of coalescence via model selection.

Kubatko LS.

Syst Biol. 2009 Oct;58(5):478-88. doi: 10.1093/sysbio/syp055. Epub 2009 Sep 16.

PMID:
20525602
[PubMed - indexed for MEDLINE]
18.

Comparison of methods for rooting phylogenetic trees: a case study using Orcuttieae (Poaceae: Chloridoideae).

Boykin LM, Kubatko LS, Lowrey TK.

Mol Phylogenet Evol. 2010 Mar;54(3):687-700. doi: 10.1016/j.ympev.2009.11.016. Epub 2009 Dec 6.

PMID:
19931622
[PubMed - indexed for MEDLINE]
19.

Reduced susceptibility to praziquantel among naturally occurring Kenyan isolates of Schistosoma mansoni.

Melman SD, Steinauer ML, Cunningham C, Kubatko LS, Mwangi IN, Wynn NB, Mutuku MW, Karanja DM, Colley DG, Black CL, Secor WE, Mkoji GM, Loker ES.

PLoS Negl Trop Dis. 2009 Aug 18;3(8):e504. doi: 10.1371/journal.pntd.0000504.

PMID:
19688043
[PubMed]
Free PMC Article
20.

Coalescent methods for estimating phylogenetic trees.

Liu L, Yu L, Kubatko L, Pearl DK, Edwards SV.

Mol Phylogenet Evol. 2009 Oct;53(1):320-8. doi: 10.1016/j.ympev.2009.05.033. Epub 2009 Jun 6. Review.

PMID:
19501178
[PubMed - indexed for MEDLINE]

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