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Items: 1 to 20 of 161

1.

RNA Sequencing of Trigeminal Ganglia in Rattus Norvegicus after Glyceryl Trinitrate Infusion with Relevance to Migraine.

Hougaard Pedersen S, Maretty L, Ramachandran R, Sibbesen JA, Yakimov V, Elgaard-Christensen R, Hansen TF, Krogh A, Olesen J, Jansen-Olesen I.

PLoS One. 2016 May 23;11(5):e0155039. doi: 10.1371/journal.pone.0155039. eCollection 2016.

2.

Fast and sensitive taxonomic classification for metagenomics with Kaiju.

Menzel P, Ng KL, Krogh A.

Nat Commun. 2016 Apr 13;7:11257. doi: 10.1038/ncomms11257.

3.

Assessment of headache characteristics in a general adolescent population: a comparison between retrospective interviews and prospective diary recordings.

Krogh AB, Larsson B, Salvesen Ø, Linde M.

J Headache Pain. 2016 Dec;17(1):14. doi: 10.1186/s10194-016-0602-4. Epub 2016 Feb 24.

4.

Transcriptome dynamics of the microRNA inhibition response.

Wen J, Leucci E, Vendramin R, Kauppinen S, Lund AH, Krogh A, Parker BJ.

Nucleic Acids Res. 2016 May 19;44(9):4486. doi: 10.1093/nar/gkw091. Epub 2016 Feb 9. No abstract available.

5.

Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale.

Liu S, Huang S, Rao J, Ye W; Genome Denmark ConsortiumII, Krogh A, Wang J.

Gigascience. 2015 Dec 24;4:64. doi: 10.1186/s13742-015-0103-4. eCollection 2015.

6.

Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs.

Gudbergsdóttir SR, Menzel P, Krogh A, Young M, Peng X.

Environ Microbiol. 2016 Mar;18(3):863-74. doi: 10.1111/1462-2920.13079. Epub 2015 Dec 21.

PMID:
26439881
7.

Corrigendum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax.

Fang X, Nevo E, Han L, Levanon EY, Zhao J, Avivi A, Larkin D, Jiang X, Feranchuk S, Zhu Y, Fishman A, Feng Y, Sher N, Xiong Z, Hankeln T, Huang Z, Gorbunova V, Zhang L, Zhao W, Wildman DE, Xiong Y, Gudkov A, Zheng Q, Rechavi G, Liu S, Bazak L, Chen J, Knisbacher BA, Lu Y, Shams I, Gajda K, Farré M, Kim J, Lewin HA, Ma J, Band M, Bicker A, Kranz A, Mattheus T, Schmidt H, Seluanov A, Azpurua J, McGowen MR, Ben Jacob E, Li K, Peng S, Zhu X, Liao X, Li S, Krogh A, Zhou X, Brodsky L, Wang J.

Nat Commun. 2015 Aug 12;6:8051. doi: 10.1038/ncomms9051. No abstract available.

PMID:
26264976
8.

A comparison between prospective Internet-based and paper diary recordings of headache among adolescents in the general population.

Krogh AB, Larsson B, Salvesen Ø, Linde M.

Cephalalgia. 2016 Apr;36(4):335-45. doi: 10.1177/0333102415591506. Epub 2015 Jun 19.

PMID:
26092285
9.

Transcriptome dynamics of the microRNA inhibition response.

Wen J, Leucci E, Vendramin R, Kauppinen S, Lund AH, Krogh A, Parker BJ.

Nucleic Acids Res. 2015 Jul 27;43(13):6207-21. doi: 10.1093/nar/gkv603. Epub 2015 Jun 18. Erratum in: Nucleic Acids Res. 2016 May 19;44(9):4486.

10.

Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation.

Hansen HT, Rasmussen SH, Adolph SK, Plass M, Krogh A, Sanford J, Nielsen FC, Christiansen J.

Genome Biol. 2015 Jun 9;16:123. doi: 10.1186/s13059-015-0687-0.

11.

De novo assembly of a haplotype-resolved human genome.

Cao H, Wu H, Luo R, Huang S, Sun Y, Tong X, Xie Y, Liu B, Yang H, Zheng H, Li J, Li B, Wang Y, Yang F, Sun P, Liu S, Gao P, Huang H, Sun J, Chen D, He G, Huang W, Huang Z, Li Y, Tellier LC, Liu X, Feng Q, Xu X, Zhang X, Bolund L, Krogh A, Kristiansen K, Drmanac R, Drmanac S, Nielsen R, Li S, Wang J, Yang H, Li Y, Wong GK, Wang J.

Nat Biotechnol. 2015 Jun;33(6):617-22. doi: 10.1038/nbt.3200. Epub 2015 May 25.

PMID:
26006006
12.

Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin.

Vikeså J, Møller AK, Kaczkowski B, Borup R, Winther O, Henao R, Krogh A, Perell K, Jensen F, Daugaard G, Nielsen FC.

BMC Cancer. 2015 Mar 19;15:151. doi: 10.1186/s12885-015-1128-x.

13.

SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data.

Poulsen LD, Kielpinski LJ, Salama SR, Krogh A, Vinther J.

RNA. 2015 May;21(5):1042-52. doi: 10.1261/rna.047068.114. Epub 2015 Mar 24.

14.

Prevalence and disability of headache among Norwegian adolescents: A cross-sectional school-based study.

Krogh AB, Larsson B, Linde M.

Cephalalgia. 2015 Nov;35(13):1181-91. doi: 10.1177/0333102415573512. Epub 2015 Feb 26.

PMID:
25720767
15.

Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs.

Menzel P, Gudbergsdóttir SR, Rike AG, Lin L, Zhang Q, Contursi P, Moracci M, Kristjansson JK, Bolduc B, Gavrilov S, Ravin N, Mardanov A, Bonch-Osmolovskaya E, Young M, Krogh A, Peng X.

Microb Ecol. 2015 Aug;70(2):411-24. doi: 10.1007/s00248-015-0576-9. Epub 2015 Feb 25.

PMID:
25712554
16.

Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology.

Cao H, Hastie AR, Cao D, Lam ET, Sun Y, Huang H, Liu X, Lin L, Andrews W, Chan S, Huang S, Tong X, Requa M, Anantharaman T, Krogh A, Yang H, Cao H, Xu X.

Gigascience. 2014 Dec 30;3(1):34. doi: 10.1186/2047-217X-3-34. eCollection 2014.

17.

Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios.

Besenbacher S, Liu S, Izarzugaza JM, Grove J, Belling K, Bork-Jensen J, Huang S, Als TD, Li S, Yadav R, Rubio-García A, Lescai F, Demontis D, Rao J, Ye W, Mailund T, Friborg RM, Pedersen CN, Xu R, Sun J, Liu H, Wang O, Cheng X, Flores D, Rydza E, Rapacki K, Damm Sørensen J, Chmura P, Westergaard D, Dworzynski P, Sørensen TI, Lund O, Hansen T, Xu X, Li N, Bolund L, Pedersen O, Eiberg H, Krogh A, Børglum AD, Brunak S, Kristiansen K, Schierup MH, Wang J, Gupta R, Villesen P, Rasmussen S.

Nat Commun. 2015 Jan 19;6:5969. doi: 10.1038/ncomms6969.

18.

Bayesian transcriptome assembly.

Maretty L, Sibbesen JA, Krogh A.

Genome Biol. 2014;15(10):501.

19.

SNPest: a probabilistic graphical model for estimating genotypes.

Lindgreen S, Krogh A, Pedersen JS.

BMC Res Notes. 2014 Oct 7;7:698. doi: 10.1186/1756-0500-7-698.

20.

Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes.

Fang X, Seim I, Huang Z, Gerashchenko MV, Xiong Z, Turanov AA, Zhu Y, Lobanov AV, Fan D, Yim SH, Yao X, Ma S, Yang L, Lee SG, Kim EB, Bronson RT, Šumbera R, Buffenstein R, Zhou X, Krogh A, Park TJ, Zhang G, Wang J, Gladyshev VN.

Cell Rep. 2014 Sep 11;8(5):1354-64. doi: 10.1016/j.celrep.2014.07.030. Epub 2014 Aug 28.

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