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Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T.

Jakobsson HE, Salvà-Serra F, Thorell K, Gonzales-Siles L, Boulund F, Karlsson R, Sikora P, Engstrand L, Kristiansson E, Moore ER.

Genome Announc. 2016 Jun 16;4(3). pii: e00552-16. doi: 10.1128/genomeA.00552-16.


Patient-tailored analysis of minimal residual disease in acute myeloid leukemia using next generation sequencing.

Malmberg EB, Ståhlman S, Rehammar A, Samuelsson T, Alm SJ, Kristiansson E, Abrahamsson J, Garelius H, Pettersson L, Ehinger M, Palmqvist L, Fogelstrand L.

Eur J Haematol. 2016 May 20. doi: 10.1111/ejh.12780. [Epub ahead of print]


Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.

Salvà-Serra F, Jakobsson HE, Thorell K, Gonzales-Siles L, Hallbäck ET, Jaén-Luchoro D, Boulund F, Sikora P, Karlsson R, Svensson L, Bennasar A, Engstrand L, Kristiansson E, Moore ER.

Genome Announc. 2016 Mar 24;4(2). pii: e00175-16. doi: 10.1128/genomeA.00175-16.


Expression profiling of small intestinal neuroendocrine tumors identifies subgroups with clinical relevance, prognostic markers and therapeutic targets.

Andersson E, Arvidsson Y, Swärd C, Hofving T, Wängberg B, Kristiansson E, Nilsson O.

Mod Pathol. 2016 Jun;29(6):616-29. doi: 10.1038/modpathol.2016.48. Epub 2016 Mar 11.


Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics.

Jonsson V, Österlund T, Nerman O, Kristiansson E.

BMC Genomics. 2016 Jan 25;17:78. doi: 10.1186/s12864-016-2386-y.


Resistance Mutations in gyrA and parC are Common in Escherichia Communities of both Fluoroquinolone-Polluted and Uncontaminated Aquatic Environments.

Johnning A, Kristiansson E, Fick J, Weijdegård B, Larsson DG.

Front Microbiol. 2015 Dec 9;6:1355. doi: 10.3389/fmicb.2015.01355. eCollection 2015.


Malignant pheochromocytomas/paragangliomas harbor mutations in transport and cell adhesion genes.

Wilzén A, Rehammar A, Muth A, Nilsson O, Tešan Tomić T, Wängberg B, Kristiansson E, Abel F.

Int J Cancer. 2016 May 1;138(9):2201-11. doi: 10.1002/ijc.29957. Epub 2015 Dec 30.


Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities.

Sanli K, Bengtsson-Palme J, Nilsson RH, Kristiansson E, Alm Rosenblad M, Blanck H, Eriksson KM.

Front Microbiol. 2015 Oct 30;6:1192. doi: 10.3389/fmicb.2015.01192. eCollection 2015.


Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential.

Pal C, Bengtsson-Palme J, Kristiansson E, Larsson DG.

BMC Genomics. 2015 Nov 17;16(1):964. doi: 10.1186/s12864-015-2153-5.


Quinolone resistance mutations in the faecal microbiota of Swedish travellers to India.

Johnning A, Kristiansson E, Angelin M, Marathe N, Shouche YS, Johansson A, Larsson DG.

BMC Microbiol. 2015 Oct 24;15:235. doi: 10.1186/s12866-015-0574-6.


Tentacle: distributed quantification of genes in metagenomes.

Boulund F, Sjögren A, Kristiansson E.

Gigascience. 2015 Sep 7;4:40. doi: 10.1186/s13742-015-0078-1. eCollection 2015.


The Human Gut Microbiome as a Transporter of Antibiotic Resistance Genes between Continents.

Bengtsson-Palme J, Angelin M, Huss M, Kjellqvist S, Kristiansson E, Palmgren H, Larsson DG, Johansson A.

Antimicrob Agents Chemother. 2015 Oct;59(10):6551-60. doi: 10.1128/AAC.00933-15. Epub 2015 Aug 10.


Isolation of novel IncA/C and IncN fluoroquinolone resistance plasmids from an antibiotic-polluted lake.

Flach CF, Johnning A, Nilsson I, Smalla K, Kristiansson E, Larsson DG.

J Antimicrob Chemother. 2015 Oct;70(10):2709-17. doi: 10.1093/jac/dkv167. Epub 2015 Jun 29.


Proteotyping: Proteomic characterization, classification and identification of microorganisms--A prospectus.

Karlsson R, Gonzales-Siles L, Boulund F, Svensson-Stadler L, Skovbjerg S, Karlsson A, Davidson M, Hulth S, Kristiansson E, Moore ER.

Syst Appl Microbiol. 2015 Jun;38(4):246-57. doi: 10.1016/j.syapm.2015.03.006. Epub 2015 Apr 11. Review.


A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts.

Nilsson RH, Tedersoo L, Ryberg M, Kristiansson E, Hartmann M, Unterseher M, Porter TM, Bengtsson-Palme J, Walker DM, de Sousa F, Gamper HA, Larsson E, Larsson KH, Kõljalg U, Edgar RC, Abarenkov K.

Microbes Environ. 2015;30(2):145-50. doi: 10.1264/jsme2.ME14121. Epub 2015 Mar 19.


Waterborne beclomethasone dipropionate affects the physiology of fish while its metabolite beclomethasone is not taken up.

Carney Almroth BM, Gunnarsson LM, Cuklev F, Fick J, Kristiansson E, Larsson DG.

Sci Total Environ. 2015 Apr 1;511:37-46. doi: 10.1016/j.scitotenv.2014.12.016. Epub 2014 Dec 18.


Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India.

Bengtsson-Palme J, Boulund F, Fick J, Kristiansson E, Larsson DG.

Front Microbiol. 2014 Dec 2;5:648. doi: 10.3389/fmicb.2014.00648. eCollection 2014.


Assessing variation in the potential susceptibility of fish to pharmaceuticals, considering evolutionary differences in their physiology and ecology.

Brown AR, Gunnarsson L, Kristiansson E, Tyler CR.

Philos Trans R Soc Lond B Biol Sci. 2014 Nov 19;369(1656). pii: 20130576. doi: 10.1098/rstb.2013.0576.


Fluoroquinolones and qnr genes in sediment, water, soil, and human fecal flora in an environment polluted by manufacturing discharges.

Rutgersson C, Fick J, Marathe N, Kristiansson E, Janzon A, Angelin M, Johansson A, Shouche Y, Flach CF, Larsson DG.

Environ Sci Technol. 2014 Jul 15;48(14):7825-32. doi: 10.1021/es501452a. Epub 2014 Jul 2.


BacMet: antibacterial biocide and metal resistance genes database.

Pal C, Bengtsson-Palme J, Rensing C, Kristiansson E, Larsson DG.

Nucleic Acids Res. 2014 Jan;42(Database issue):D737-43. doi: 10.1093/nar/gkt1252. Epub 2013 Dec 3.

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