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Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities.

Sanli K, Bengtsson-Palme J, Nilsson RH, Kristiansson E, Alm Rosenblad M, Blanck H, Eriksson KM.

Front Microbiol. 2015 Oct 30;6:1192. eCollection 2015.


Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential.

Pal C, Bengtsson-Palme J, Kristiansson E, Larsson DG.

BMC Genomics. 2015 Nov 17;16(1):964. doi: 10.1186/s12864-015-2153-5.


Quinolone resistance mutations in the faecal microbiota of Swedish travellers to India.

Johnning A, Kristiansson E, Angelin M, Marathe N, Shouche YS, Johansson A, Larsson DG.

BMC Microbiol. 2015 Oct 24;15(1):235. doi: 10.1186/s12866-015-0574-6.


Tentacle: distributed quantification of genes in metagenomes.

Boulund F, Sjögren A, Kristiansson E.

Gigascience. 2015 Sep 7;4:40. doi: 10.1186/s13742-015-0078-1. eCollection 2015.


The Human Gut Microbiome as a Transporter of Antibiotic Resistance Genes between Continents.

Bengtsson-Palme J, Angelin M, Huss M, Kjellqvist S, Kristiansson E, Palmgren H, Larsson DG, Johansson A.

Antimicrob Agents Chemother. 2015 Oct;59(10):6551-60. doi: 10.1128/AAC.00933-15. Epub 2015 Aug 10.


Isolation of novel IncA/C and IncN fluoroquinolone resistance plasmids from an antibiotic-polluted lake.

Flach CF, Johnning A, Nilsson I, Smalla K, Kristiansson E, Larsson DG.

J Antimicrob Chemother. 2015 Oct;70(10):2709-17. doi: 10.1093/jac/dkv167. Epub 2015 Jun 29.


Proteotyping: Proteomic characterization, classification and identification of microorganisms--A prospectus.

Karlsson R, Gonzales-Siles L, Boulund F, Svensson-Stadler L, Skovbjerg S, Karlsson A, Davidson M, Hulth S, Kristiansson E, Moore ER.

Syst Appl Microbiol. 2015 Jun;38(4):246-57. doi: 10.1016/j.syapm.2015.03.006. Epub 2015 Apr 11. Review.


A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts.

Nilsson RH, Tedersoo L, Ryberg M, Kristiansson E, Hartmann M, Unterseher M, Porter TM, Bengtsson-Palme J, Walker DM, de Sousa F, Gamper HA, Larsson E, Larsson KH, Kõljalg U, Edgar RC, Abarenkov K.

Microbes Environ. 2015;30(2):145-50. doi: 10.1264/jsme2.ME14121. Epub 2015 Mar 19.


Waterborne beclomethasone dipropionate affects the physiology of fish while its metabolite beclomethasone is not taken up.

Carney Almroth BM, Gunnarsson LM, Cuklev F, Fick J, Kristiansson E, Larsson DG.

Sci Total Environ. 2015 Apr 1;511:37-46. doi: 10.1016/j.scitotenv.2014.12.016. Epub 2014 Dec 18.


Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India.

Bengtsson-Palme J, Boulund F, Fick J, Kristiansson E, Larsson DG.

Front Microbiol. 2014 Dec 2;5:648. doi: 10.3389/fmicb.2014.00648. eCollection 2014.


Assessing variation in the potential susceptibility of fish to pharmaceuticals, considering evolutionary differences in their physiology and ecology.

Brown AR, Gunnarsson L, Kristiansson E, Tyler CR.

Philos Trans R Soc Lond B Biol Sci. 2014 Nov 19;369(1656). pii: 20130576. doi: 10.1098/rstb.2013.0576.


Fluoroquinolones and qnr genes in sediment, water, soil, and human fecal flora in an environment polluted by manufacturing discharges.

Rutgersson C, Fick J, Marathe N, Kristiansson E, Janzon A, Angelin M, Johansson A, Shouche Y, Flach CF, Larsson DG.

Environ Sci Technol. 2014 Jul 15;48(14):7825-32. doi: 10.1021/es501452a. Epub 2014 Jul 2.


BacMet: antibacterial biocide and metal resistance genes database.

Pal C, Bengtsson-Palme J, Rensing C, Kristiansson E, Larsson DG.

Nucleic Acids Res. 2014 Jan;42(Database issue):D737-43. doi: 10.1093/nar/gkt1252. Epub 2013 Dec 3.


Functional verification of computationally predicted qnr genes.

Flach CF, Boulund F, Kristiansson E, Larsson DJ.

Ann Clin Microbiol Antimicrob. 2013 Nov 21;12:34. doi: 10.1186/1476-0711-12-34.


Acquired genetic mechanisms of a multiresistant bacterium isolated from a treatment plant receiving wastewater from antibiotic production.

Johnning A, Moore ER, Svensson-Stadler L, Shouche YS, Larsson DG, Kristiansson E.

Appl Environ Microbiol. 2013 Dec;79(23):7256-63. doi: 10.1128/AEM.02141-13. Epub 2013 Sep 13.


Expression of the glucocorticoid receptor is decreased in experimental Staphylococcus aureus sepsis.

Bergquist M, Nurkkala M, Rylander C, Kristiansson E, Hedenstierna G, Lindholm C.

J Infect. 2013 Dec;67(6):574-83. doi: 10.1016/j.jinf.2013.07.028. Epub 2013 Aug 6.


ERBB3 is a marker of a ganglioneuroblastoma/ganglioneuroma-like expression profile in neuroblastic tumours.

Wilzén A, Krona C, Sveinbjörnsson B, Kristiansson E, Dalevi D, Øra I, De Preter K, Stallings RL, Maris J, Versteeg R, Nilsson S, Kogner P, Abel F.

Mol Cancer. 2013 Jul 8;12(1):70. doi: 10.1186/1476-4598-12-70.


A novel method for cross-species gene expression analysis.

Kristiansson E, Österlund T, Gunnarsson L, Arne G, Larsson DG, Nerman O.

BMC Bioinformatics. 2013 Feb 27;14:70. doi: 10.1186/1471-2105-14-70.


Hepatic transcriptome profiling indicates differential mRNA expression of apoptosis and immune related genes in eelpout (Zoarces viviparus) caught at Göteborg harbor, Sweden.

Asker N, Kristiansson E, Albertsson E, Larsson DG, Förlin L.

Aquat Toxicol. 2013 Apr 15;130-131:58-67. doi: 10.1016/j.aquatox.2012.12.017. Epub 2012 Dec 28.


Oral exposure to industrial effluent with exceptionally high levels of drugs does not indicate acute toxic effects in rats.

Rutgersson C, Gunnarsson L, Fick J, Kristiansson E, Larsson DG.

Environ Toxicol Chem. 2013 Mar;32(3):577-84. doi: 10.1002/etc.2105. Erratum in: Environ Toxicol Chem. 2013 Apr;32(4):966.

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