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Results: 1 to 20 of 60

1.

Computational analysis in cancer exome sequencing.

Evans P, Kong Y, Krauthammer M.

Methods Mol Biol. 2014;1176:219-27. doi: 10.1007/978-1-4939-0992-6_18.

PMID:
25030931
[PubMed - in process]
2.

Rare SF3B1 R625 mutations in cutaneous melanoma.

Kong Y, Krauthammer M, Halaban R.

Melanoma Res. 2014 Aug;24(4):332-4. doi: 10.1097/CMR.0000000000000071.

PMID:
24709888
[PubMed - in process]
3.

Mining images in biomedical publications: Detection and analysis of gel diagrams.

Kuhn T, Nagy ML, Luong T, Krauthammer M.

J Biomed Semantics. 2014 Feb 25;5(1):10. doi: 10.1186/2041-1480-5-10.

PMID:
24568573
[PubMed]
Free Article
4.

Identification of PLX4032-resistance mechanisms and implications for novel RAF inhibitors.

Choi J, Landrette SF, Wang T, Evans P, Bacchiocchi A, Bjornson R, Cheng E, Stiegler AL, Gathiaka S, Acevedo O, Boggon TJ, Krauthammer M, Halaban R, Xu T.

Pigment Cell Melanoma Res. 2014 Mar;27(2):253-62. doi: 10.1111/pcmr.12197. Epub 2014 Jan 6.

PMID:
24283590
[PubMed - in process]
Free PMC Article
5.

Modeling the neurovascular niche: unbiased transcriptome analysis of the murine subventricular zone in response to hypoxic insult.

Li Q, Canosa S, Flynn K, Michaud M, Krauthammer M, Madri JA.

PLoS One. 2013 Oct 11;8(10):e76265. doi: 10.1371/journal.pone.0076265. eCollection 2013.

PMID:
24146847
[PubMed - in process]
Free PMC Article
6.

Adjusting for background mutation frequency biases improves the identification of cancer driver genes.

Evans P, Avey S, Kong Y, Krauthammer M.

IEEE Trans Nanobioscience. 2013 Sep;12(3):150-7. doi: 10.1109/TNB.2013.2263391. Epub 2013 May 16.

PMID:
23694700
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Complementary ensemble clustering of biomedical data.

Fodeh SJ, Brandt C, Luong TB, Haddad A, Schultz M, Murphy T, Krauthammer M.

J Biomed Inform. 2013 Jun;46(3):436-43. doi: 10.1016/j.jbi.2013.02.001. Epub 2013 Feb 27.

PMID:
23454721
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Finding and accessing diagrams in biomedical publications.

Kuhn T, Luong T, Krauthammer M.

AMIA Annu Symp Proc. 2012;2012:468-74. Epub 2012 Nov 3.

PMID:
23304318
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Type II p21-activated kinases (PAKs) are regulated by an autoinhibitory pseudosubstrate.

Ha BH, Davis MJ, Chen C, Lou HJ, Gao J, Zhang R, Krauthammer M, Halaban R, Schlessinger J, Turk BE, Boggon TJ.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16107-12. doi: 10.1073/pnas.1214447109. Epub 2012 Sep 17.

PMID:
22988085
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.

Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R.

Nat Genet. 2012 Sep;44(9):1006-14. doi: 10.1038/ng.2359. Epub 2012 Jul 29.

PMID:
22842228
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A semantic web framework to integrate cancer omics data with biological knowledge.

Holford ME, McCusker JP, Cheung KH, Krauthammer M.

BMC Bioinformatics. 2012 Jan 25;13 Suppl 1:S10. [Epub ahead of print]

PMID:
22373303
[PubMed - as supplied by publisher]
Free PMC Article
12.

Exploring the use of social media to measure journal article impact.

Evans P, Krauthammer M.

AMIA Annu Symp Proc. 2011;2011:374-81. Epub 2011 Oct 22.

PMID:
22195090
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma.

Karreth FA, Tay Y, Perna D, Ala U, Tan SM, Rust AG, DeNicola G, Webster KA, Weiss D, Perez-Mancera PA, Krauthammer M, Halaban R, Provero P, Adams DJ, Tuveson DA, Pandolfi PP.

Cell. 2011 Oct 14;147(2):382-95. doi: 10.1016/j.cell.2011.09.032. Erratum in: Cell. 2011 Nov 11;147(4):948.

PMID:
22000016
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Rare nonsynonymous variants in alpha-4 nicotinic acetylcholine receptor gene protect against nicotine dependence.

Xie P, Kranzler HR, Krauthammer M, Cosgrove KP, Oslin D, Anton RF, Farrer LA, Picciotto MR, Krystal JH, Zhao H, Gelernter J.

Biol Psychiatry. 2011 Sep 15;70(6):528-36. doi: 10.1016/j.biopsych.2011.04.017. Epub 2011 Jun 17.

PMID:
21683344
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

MicroRNA signatures differentiate melanoma subtypes.

Chan E, Patel R, Nallur S, Ratner E, Bacchiocchi A, Hoyt K, Szpakowski S, Godshalk S, Ariyan S, Sznol M, Halaban R, Krauthammer M, Tuck D, Slack FJ, Weidhaas JB.

Cell Cycle. 2011 Jun 1;10(11):1845-52. Epub 2011 Jun 1.

PMID:
21543894
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Phosphoproteomic screen identifies potential therapeutic targets in melanoma.

Tworkoski K, Singhal G, Szpakowski S, Zito CI, Bacchiocchi A, Muthusamy V, Bosenberg M, Krauthammer M, Halaban R, Stern DF.

Mol Cancer Res. 2011 Jun;9(6):801-12. doi: 10.1158/1541-7786.MCR-10-0512. Epub 2011 Apr 26.

PMID:
21521745
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

MU2A--reconciling the genome and transcriptome to determine the effects of base substitutions.

Garla V, Kong Y, Szpakowski S, Krauthammer M.

Bioinformatics. 2011 Feb 1;27(3):416-8. doi: 10.1093/bioinformatics/btq658. Epub 2010 Dec 12.

PMID:
21149339
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A new pivoting and iterative text detection algorithm for biomedical images.

Xu S, Krauthammer M.

J Biomed Inform. 2010 Dec;43(6):924-31. doi: 10.1016/j.jbi.2010.09.006. Epub 2010 Sep 29.

PMID:
20887803
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Bmp5/7 in concert with the mid-hindbrain organizer control development of noradrenergic locus coeruleus neurons.

Tilleman H, Hakim V, Novikov O, Liser K, Nashelsky L, Di Salvio M, Krauthammer M, Scheffner O, Maor I, Mayseless O, Meir I, Kayam G, Sela-Donenfeld D, Simeone A, Brodski C.

Mol Cell Neurosci. 2010 Sep;45(1):1-11. doi: 10.1016/j.mcn.2010.05.003. Epub 2010 May 21.

PMID:
20493948
[PubMed - indexed for MEDLINE]
20.

PLX4032, a selective BRAF(V600E) kinase inhibitor, activates the ERK pathway and enhances cell migration and proliferation of BRAF melanoma cells.

Halaban R, Zhang W, Bacchiocchi A, Cheng E, Parisi F, Ariyan S, Krauthammer M, McCusker JP, Kluger Y, Sznol M.

Pigment Cell Melanoma Res. 2010 Apr;23(2):190-200. doi: 10.1111/j.1755-148X.2010.00685.x. Epub 2010 Feb 10. Erratum in: Pigment Cell Melanoma Res. 2012 May;25(3):402.

PMID:
20149136
[PubMed - indexed for MEDLINE]
Free PMC Article

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