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Soil-borne microbial functional structure across different land uses.

Kuramae EE, Zhou JZ, Kowalchuk GA, van Veen JA.

ScientificWorldJournal. 2014;2014:216071. doi: 10.1155/2014/216071. Epub 2014 Aug 10.


Impact of matric potential and pore size distribution on growth dynamics of filamentous and non-filamentous soil bacteria.

Wolf AB, Vos M, de Boer W, Kowalchuk GA.

PLoS One. 2013 Dec 31;8(12):e83661. doi: 10.1371/journal.pone.0083661. eCollection 2013.


Tracking fungal community responses to maize plants by DNA- and RNA-based pyrosequencing.

Kuramae EE, Verbruggen E, Hillekens R, de Hollander M, Röling WF, van der Heijden MG, Kowalchuk GA.

PLoS One. 2013 Jul 18;8(7):e69973. doi: 10.1371/journal.pone.0069973. Print 2013.


Testing potential effects of maize expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt maize) on mycorrhizal fungal communities via DNA- and RNA-based pyrosequencing and molecular fingerprinting.

Verbruggen E, Kuramae EE, Hillekens R, de Hollander M, Kiers ET, Röling WF, Kowalchuk GA, van der Heijden MG.

Appl Environ Microbiol. 2012 Oct;78(20):7384-92. Epub 2012 Aug 10.


A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity.

Vos M, Quince C, Pijl AS, de Hollander M, Kowalchuk GA.

PLoS One. 2012;7(2):e30600. doi: 10.1371/journal.pone.0030600. Epub 2012 Feb 15.


Variation in local carrying capacity and the individual fate of bacterial colonizers in the phyllosphere.

Remus-Emsermann MN, Tecon R, Kowalchuk GA, Leveau JH.

ISME J. 2012 Apr;6(4):756-65. doi: 10.1038/ismej.2011.209. Epub 2012 Jan 19.


Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments.

Yergeau E, Bokhorst S, Kang S, Zhou J, Greer CW, Aerts R, Kowalchuk GA.

ISME J. 2012 Mar;6(3):692-702. doi: 10.1038/ismej.2011.124. Epub 2011 Sep 22.


Impact of metal pollution and Thlaspi caerulescens growth on soil microbial communities.

Epelde L, Becerril JM, Kowalchuk GA, Deng Y, Zhou J, Garbisu C.

Appl Environ Microbiol. 2010 Dec;76(23):7843-53. doi: 10.1128/AEM.01045-10. Epub 2010 Oct 8.


Comparative analysis of acidobacterial genomic fragments from terrestrial and aquatic metagenomic libraries, with emphasis on acidobacteria subdivision 6.

Kielak AM, van Veen JA, Kowalchuk GA.

Appl Environ Microbiol. 2010 Oct;76(20):6769-77. doi: 10.1128/AEM.00343-10. Epub 2010 Aug 20.


Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2.

Drigo B, Pijl AS, Duyts H, Kielak AM, Gamper HA, Houtekamer MJ, Boschker HT, Bodelier PL, Whiteley AS, van Veen JA, Kowalchuk GA.

Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10938-42. doi: 10.1073/pnas.0912421107. Epub 2010 Jun 1.


Accurate quantification of microorganisms in PCR-inhibiting environmental DNA extracts by a novel internal amplification control approach using Biotrove OpenArrays.

van Doorn R, Klerks MM, van Gent-Pelzer MP, Speksnijder AG, Kowalchuk GA, Schoen CD.

Appl Environ Microbiol. 2009 Nov;75(22):7253-60. doi: 10.1128/AEM.00796-09. Epub 2009 Oct 2.


Robust detection and identification of multiple oomycetes and fungi in environmental samples by using a novel cleavable padlock probe-based ligation detection assay.

van Doorn R, Slawiak M, Szemes M, Dullemans AM, Bonants P, Kowalchuk GA, Schoen CD.

Appl Environ Microbiol. 2009 Jun;75(12):4185-93. doi: 10.1128/AEM.00071-09. Epub 2009 Apr 24.


Quantitative multiplex detection of plant pathogens using a novel ligation probe-based system coupled with universal, high-throughput real-time PCR on OpenArrays.

van Doorn R, Szemes M, Bonants P, Kowalchuk GA, Salles JF, Ortenberg E, Schoen CD.

BMC Genomics. 2007 Aug 14;8:276.


Finding the needles in the metagenome haystack.

Kowalchuk GA, Speksnijder AG, Zhang K, Goodman RM, van Veen JA.

Microb Ecol. 2007 Apr;53(3):475-85. Epub 2007 Mar 8.


Microbial community composition affects soil fungistasis.

de Boer W, Verheggen P, Klein Gunnewiek PJ, Kowalchuk GA, van Veen JA.

Appl Environ Microbiol. 2003 Feb;69(2):835-44.


Growth of chitinolytic dune soil beta-subclass Proteobacteria in response to invading fungal hyphae.

De Boer W, Klein Gunnewiek PJ, Kowalchuk GA, Van Veen JA.

Appl Environ Microbiol. 2001 Aug;67(8):3358-62.


Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences.

Speksnijder AG, Kowalchuk GA, De Jong S, Kline E, Stephen JR, Laanbroek HJ.

Appl Environ Microbiol. 2001 Jan;67(1):469-72.


Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils.

Bruns MA, Stephen JR, Kowalchuk GA, Prosser JI, Paul EA.

Appl Environ Microbiol. 1999 Jul;65(7):2994-3000.

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