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Results: 1 to 20 of 67

1.

Computational Construction of Antibody-Drug Conjugates Using Surface Lysines as the Antibody Conjugation Site and a Non-cleavable Linker.

Filntisi A, Vlachakis D, Matsopoulos GK, Kossida S.

Cancer Inform. 2014 Dec 8;13:179-86. doi: 10.4137/CIN.S19222. eCollection 2014.

PMID:
25506200
[PubMed]
Free PMC Article
2.

Notch signaling and ageing.

Polychronidou E, Vlachakis D, Vlamos P, Baumann M, Kossida S.

Adv Exp Med Biol. 2015;822:25-36. doi: 10.1007/978-3-319-08927-0_6.

PMID:
25416974
[PubMed - in process]
3.

Structural models for the design of novel antiviral agents against Greek Goat Encephalitis.

Papageorgiou L, Loukatou S, Koumandou VL, Makałowski W, Megalooikonomou V, Vlachakis D, Kossida S.

PeerJ. 2014 Nov 6;2:e664. doi: 10.7717/peerj.664. eCollection 2014.

PMID:
25392762
[PubMed]
Free PMC Article
4.

IMGT®, the international ImMunoGeneTics information system® 25 years on.

Lefranc MP, Giudicelli V, Duroux P, Jabado-Michaloud J, Folch G, Aouinti S, Carillon E, Duvergey H, Houles A, Paysan-Lafosse T, Hadi-Saljoqi S, Sasorith S, Lefranc G, Kossida S.

Nucleic Acids Res. 2015 Jan 28;43(Database issue):D413-22. doi: 10.1093/nar/gku1056. Epub 2014 Nov 5.

PMID:
25378316
[PubMed - in process]
Free Article
5.

Evolution of the F0F1 ATP synthase complex in light of the patchy distribution of different bioenergetic pathways across prokaryotes.

Koumandou VL, Kossida S.

PLoS Comput Biol. 2014 Sep 4;10(9):e1003821. doi: 10.1371/journal.pcbi.1003821. eCollection 2014 Sep.

PMID:
25188293
[PubMed - in process]
Free PMC Article
6.

AmalgamScope: merging annotations data across the human genome.

Tsiliki G, Tsaramirsis K, Kossida S.

Biomed Res Int. 2014;2014:893501. doi: 10.1155/2014/893501. Epub 2014 May 20.

PMID:
24967409
[PubMed - in process]
Free PMC Article
7.

On integrating multi-experiment microarray data.

Tsiliki G, Vlachakis D, Kossida S.

Philos Trans A Math Phys Eng Sci. 2014 Apr 21;372(2016):20130136. doi: 10.1098/rsta.2013.0136. Print 2014 May 28.

PMID:
24751870
[PubMed - indexed for MEDLINE]
8.

Current State-of-the-Art Molecular Dynamics Methods and Applications.

Vlachakis D, Bencurova E, Papangelopoulos N, Kossida S.

Adv Protein Chem Struct Biol. 2014;94:269-313. doi: 10.1016/B978-0-12-800168-4.00007-X.

PMID:
24629189
[PubMed - in process]
9.

Frequent gene fissions associated with human pathogenic bacteria.

Karamichali I, Koumandou VL, Karagouni AD, Kossida S.

Genomics. 2014 Jan;103(1):65-75. doi: 10.1016/j.ygeno.2014.02.001. Epub 2014 Feb 12.

PMID:
24530517
[PubMed - indexed for MEDLINE]
10.

Silencing motifs in the Clr2 protein from fission yeast, Schizosaccharomyces pombe.

Steinhauf D, Rodriguez A, Vlachakis D, Virgo G, Maksimov V, Kristell C, Olsson I, Linder T, Kossida S, Bongcam-Rudloff E, Bjerling P.

PLoS One. 2014 Jan 27;9(1):e86948. doi: 10.1371/journal.pone.0086948. eCollection 2014.

PMID:
24475199
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Design, synthesis and application of benzyl-sulfonate biomimetic affinity adsorbents for monoclonal antibody purification from transgenic corn.

Maltezos A, Platis D, Vlachakis D, Kossida S, Marinou M, Labrou NE.

J Mol Recognit. 2014 Jan;27(1):19-31. doi: 10.1002/jmr.2327.

PMID:
24375581
[PubMed - indexed for MEDLINE]
12.

A comprehensive phylogenetic analysis of deadenylases.

Pavlopoulou A, Vlachakis D, Balatsos NA, Kossida S.

Evol Bioinform Online. 2013 Dec 2;9:491-7. doi: 10.4137/EBO.S12746. eCollection 2013.

PMID:
24348009
[PubMed]
Free PMC Article
13.

3D molecular modeling and evolutionary study of the Trypanosoma brucei DNA Topoisomerase IB, as a new emerging pharmacological target.

Vlachakis D, Pavlopoulou A, Roubelakis MG, Feidakis C, Anagnou NP, Kossida S.

Genomics. 2014 Jan;103(1):107-13. doi: 10.1016/j.ygeno.2013.11.008. Epub 2013 Dec 5.

PMID:
24316217
[PubMed - indexed for MEDLINE]
14.

3D Molecular Modelling Study of the H7N9 RNA-Dependent RNA Polymerase as an Emerging Pharmacological Target.

Vlachakis D, Karozou A, Kossida S.

Influenza Res Treat. 2013;2013:645348. doi: 10.1155/2013/645348. Epub 2013 Sep 25.

PMID:
24187616
[PubMed]
Free PMC Article
15.

Protein signatures using electrostatic molecular surfaces in harmonic space.

Carvalho CS, Vlachakis D, Tsiliki G, Megalooikonomou V, Kossida S.

PeerJ. 2013 Oct 22;1:e185. doi: 10.7717/peerj.185. eCollection 2013.

PMID:
24167780
[PubMed]
Free PMC Article
16.

Space constrained homology modelling: the paradigm of the RNA-dependent RNA polymerase of dengue (type II) virus.

Vlachakis D, Kontopoulos DG, Kossida S.

Comput Math Methods Med. 2013;2013:108910. doi: 10.1155/2013/108910. Epub 2013 Aug 6.

PMID:
23986788
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Unraveling microalgal molecular interactions using evolutionary and structural bioinformatics.

Vlachakis D, Pavlopoulou A, Kazazi D, Kossida S.

Gene. 2013 Oct 10;528(2):109-19. doi: 10.1016/j.gene.2013.07.039. Epub 2013 Jul 28.

PMID:
23900196
[PubMed - indexed for MEDLINE]
18.

Gene fusion analysis in the battle against the African endemic sleeping sickness.

Trimpalis P, Koumandou VL, Pliakou E, Anagnou NP, Kossida S.

PLoS One. 2013 Jul 17;8(7):e68854. doi: 10.1371/journal.pone.0068854. Print 2013.

PMID:
23874788
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Antibody Drug Conjugate bioinformatics: drug delivery through the letterbox.

Vlachakis D, Kossida S.

Comput Math Methods Med. 2013;2013:282398. doi: 10.1155/2013/282398. Epub 2013 Jun 19.

PMID:
23853668
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

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