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Results: 1 to 20 of 63

1.

Evolution of the F0F1 ATP synthase complex in light of the patchy distribution of different bioenergetic pathways across prokaryotes.

Koumandou VL, Kossida S.

PLoS Comput Biol. 2014 Sep 4;10(9):e1003821. doi: 10.1371/journal.pcbi.1003821. eCollection 2014 Sep.

PMID:
25188293
[PubMed - in process]
Free PMC Article
2.

AmalgamScope: merging annotations data across the human genome.

Tsiliki G, Tsaramirsis K, Kossida S.

Biomed Res Int. 2014;2014:893501. doi: 10.1155/2014/893501. Epub 2014 May 20.

PMID:
24967409
[PubMed - in process]
Free PMC Article
3.

On integrating multi-experiment microarray data.

Tsiliki G, Vlachakis D, Kossida S.

Philos Trans A Math Phys Eng Sci. 2014 Apr 21;372(2016):20130136. doi: 10.1098/rsta.2013.0136. Print 2014 May 28.

PMID:
24751870
[PubMed - indexed for MEDLINE]
4.

Current State-of-the-Art Molecular Dynamics Methods and Applications.

Vlachakis D, Bencurova E, Papangelopoulos N, Kossida S.

Adv Protein Chem Struct Biol. 2014;94:269-313. doi: 10.1016/B978-0-12-800168-4.00007-X.

PMID:
24629189
[PubMed - in process]
5.

Frequent gene fissions associated with human pathogenic bacteria.

Karamichali I, Koumandou VL, Karagouni AD, Kossida S.

Genomics. 2014 Jan;103(1):65-75. doi: 10.1016/j.ygeno.2014.02.001. Epub 2014 Feb 12.

PMID:
24530517
[PubMed - in process]
6.

Silencing motifs in the Clr2 protein from fission yeast, Schizosaccharomyces pombe.

Steinhauf D, Rodriguez A, Vlachakis D, Virgo G, Maksimov V, Kristell C, Olsson I, Linder T, Kossida S, Bongcam-Rudloff E, Bjerling P.

PLoS One. 2014 Jan 27;9(1):e86948. doi: 10.1371/journal.pone.0086948. eCollection 2014.

PMID:
24475199
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Design, synthesis and application of benzyl-sulfonate biomimetic affinity adsorbents for monoclonal antibody purification from transgenic corn.

Maltezos A, Platis D, Vlachakis D, Kossida S, Marinou M, Labrou NE.

J Mol Recognit. 2014 Jan;27(1):19-31. doi: 10.1002/jmr.2327.

PMID:
24375581
[PubMed - indexed for MEDLINE]
8.

A comprehensive phylogenetic analysis of deadenylases.

Pavlopoulou A, Vlachakis D, Balatsos NA, Kossida S.

Evol Bioinform Online. 2013 Dec 2;9:491-7. doi: 10.4137/EBO.S12746. eCollection 2013.

PMID:
24348009
[PubMed]
Free PMC Article
9.

3D molecular modeling and evolutionary study of the Trypanosoma brucei DNA Topoisomerase IB, as a new emerging pharmacological target.

Vlachakis D, Pavlopoulou A, Roubelakis MG, Feidakis C, Anagnou NP, Kossida S.

Genomics. 2014 Jan;103(1):107-13. doi: 10.1016/j.ygeno.2013.11.008. Epub 2013 Dec 5.

PMID:
24316217
[PubMed - in process]
10.

3D Molecular Modelling Study of the H7N9 RNA-Dependent RNA Polymerase as an Emerging Pharmacological Target.

Vlachakis D, Karozou A, Kossida S.

Influenza Res Treat. 2013;2013:645348. doi: 10.1155/2013/645348. Epub 2013 Sep 25.

PMID:
24187616
[PubMed]
Free PMC Article
11.

Protein signatures using electrostatic molecular surfaces in harmonic space.

Carvalho CS, Vlachakis D, Tsiliki G, Megalooikonomou V, Kossida S.

PeerJ. 2013 Oct 22;1:e185. doi: 10.7717/peerj.185. eCollection 2013.

PMID:
24167780
[PubMed]
Free PMC Article
12.

Space constrained homology modelling: the paradigm of the RNA-dependent RNA polymerase of dengue (type II) virus.

Vlachakis D, Kontopoulos DG, Kossida S.

Comput Math Methods Med. 2013;2013:108910. doi: 10.1155/2013/108910. Epub 2013 Aug 6.

PMID:
23986788
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Unraveling microalgal molecular interactions using evolutionary and structural bioinformatics.

Vlachakis D, Pavlopoulou A, Kazazi D, Kossida S.

Gene. 2013 Oct 10;528(2):109-19. doi: 10.1016/j.gene.2013.07.039. Epub 2013 Jul 28.

PMID:
23900196
[PubMed - indexed for MEDLINE]
14.

Gene fusion analysis in the battle against the African endemic sleeping sickness.

Trimpalis P, Koumandou VL, Pliakou E, Anagnou NP, Kossida S.

PLoS One. 2013 Jul 17;8(7):e68854. doi: 10.1371/journal.pone.0068854. Print 2013.

PMID:
23874788
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Antibody Drug Conjugate bioinformatics: drug delivery through the letterbox.

Vlachakis D, Kossida S.

Comput Math Methods Med. 2013;2013:282398. doi: 10.1155/2013/282398. Epub 2013 Jun 19.

PMID:
23853668
[PubMed - indexed for MEDLINE]
Free PMC Article
16.
17.

Antiviral Stratagems Against HIV-1 Using RNA Interference (RNAi) Technology.

Vlachakis D, Tsiliki G, Pavlopoulou A, Roubelakis MG, Tsaniras SC, Kossida S.

Evol Bioinform Online. 2013 May 16;9:203-13. doi: 10.4137/EBO.S11412. Print 2013.

PMID:
23761954
[PubMed]
Free PMC Article
18.

A holistic evolutionary and structural study of flaviviridae provides insights into the function and inhibition of HCV helicase.

Vlachakis D, Koumandou VL, Kossida S.

PeerJ. 2013 May 7;1:e74. doi: 10.7717/peerj.74. Print 2013.

PMID:
23678398
[PubMed]
Free PMC Article
19.

IMGT/Collier-de-Perles: a two-dimensional visualization tool for amino acid domain sequences.

Vlachakis D, Feidakis C, Megalooikonomou V, Kossida S.

Theor Biol Med Model. 2013 Feb 21;10:14. doi: 10.1186/1742-4682-10-14.

PMID:
23432825
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Evaluation of the Zucker diabetic fatty (ZDF) rat as a model for human disease based on urinary peptidomic profiles.

Siwy J, Zoja C, Klein J, Benigni A, Mullen W, Mayer B, Mischak H, Jankowski J, Stevens R, Vlahou A, Kossida S, Perco P, Bahlmann FH.

PLoS One. 2012;7(12):e51334. doi: 10.1371/journal.pone.0051334. Epub 2012 Dec 7.

PMID:
23236474
[PubMed - indexed for MEDLINE]
Free PMC Article

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