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Results: 1 to 20 of 69

1.

Deciphering the protein interaction in adhesion of Francisella tularensis subsp. holarctica to the endothelial cells.

Bencurova E, Kovac A, Pulzova L, Gyuranecz M, Mlynarcik P, Mucha R, Vlachakis D, Kossida S, Flachbartova Z, Bhide M.

Microb Pathog. 2015 Apr;81:6-15. doi: 10.1016/j.micpath.2015.03.007. Epub 2015 Mar 11.

PMID:
25769821
2.

DrugOn: a fully integrated pharmacophore modeling and structure optimization toolkit.

Vlachakis D, Fakourelis P, Megalooikonomou V, Makris C, Kossida S.

PeerJ. 2015 Jan 13;3:e725. doi: 10.7717/peerj.725. eCollection 2015.

3.

Computational Construction of Antibody-Drug Conjugates Using Surface Lysines as the Antibody Conjugation Site and a Non-cleavable Linker.

Filntisi A, Vlachakis D, Matsopoulos GK, Kossida S.

Cancer Inform. 2014 Dec 8;13:179-86. doi: 10.4137/CIN.S19222. eCollection 2014.

4.

Notch signaling and ageing.

Polychronidou E, Vlachakis D, Vlamos P, Baumann M, Kossida S.

Adv Exp Med Biol. 2015;822:25-36. doi: 10.1007/978-3-319-08927-0_6.

PMID:
25416974
5.

Structural models for the design of novel antiviral agents against Greek Goat Encephalitis.

Papageorgiou L, Loukatou S, Koumandou VL, Makałowski W, Megalooikonomou V, Vlachakis D, Kossida S.

PeerJ. 2014 Nov 6;2:e664. doi: 10.7717/peerj.664. eCollection 2014.

6.

IMGT®, the international ImMunoGeneTics information system® 25 years on.

Lefranc MP, Giudicelli V, Duroux P, Jabado-Michaloud J, Folch G, Aouinti S, Carillon E, Duvergey H, Houles A, Paysan-Lafosse T, Hadi-Saljoqi S, Sasorith S, Lefranc G, Kossida S.

Nucleic Acids Res. 2015 Jan;43(Database issue):D413-22. doi: 10.1093/nar/gku1056. Epub 2014 Nov 5.

7.

Evolution of the F0F1 ATP synthase complex in light of the patchy distribution of different bioenergetic pathways across prokaryotes.

Koumandou VL, Kossida S.

PLoS Comput Biol. 2014 Sep 4;10(9):e1003821. doi: 10.1371/journal.pcbi.1003821. eCollection 2014 Sep.

8.

AmalgamScope: merging annotations data across the human genome.

Tsiliki G, Tsaramirsis K, Kossida S.

Biomed Res Int. 2014;2014:893501. doi: 10.1155/2014/893501. Epub 2014 May 20.

9.

On integrating multi-experiment microarray data.

Tsiliki G, Vlachakis D, Kossida S.

Philos Trans A Math Phys Eng Sci. 2014 Apr 21;372(2016):20130136. doi: 10.1098/rsta.2013.0136. Print 2014 May 28.

PMID:
24751870
10.

Current state-of-the-art molecular dynamics methods and applications.

Vlachakis D, Bencurova E, Papangelopoulos N, Kossida S.

Adv Protein Chem Struct Biol. 2014;94:269-313. doi: 10.1016/B978-0-12-800168-4.00007-X. Review.

PMID:
24629189
11.

Frequent gene fissions associated with human pathogenic bacteria.

Karamichali I, Koumandou VL, Karagouni AD, Kossida S.

Genomics. 2014 Jan;103(1):65-75. doi: 10.1016/j.ygeno.2014.02.001. Epub 2014 Feb 12.

PMID:
24530517
12.

Silencing motifs in the Clr2 protein from fission yeast, Schizosaccharomyces pombe.

Steinhauf D, Rodriguez A, Vlachakis D, Virgo G, Maksimov V, Kristell C, Olsson I, Linder T, Kossida S, Bongcam-Rudloff E, Bjerling P.

PLoS One. 2014 Jan 27;9(1):e86948. doi: 10.1371/journal.pone.0086948. eCollection 2014.

13.

Design, synthesis and application of benzyl-sulfonate biomimetic affinity adsorbents for monoclonal antibody purification from transgenic corn.

Maltezos A, Platis D, Vlachakis D, Kossida S, Marinou M, Labrou NE.

J Mol Recognit. 2014 Jan;27(1):19-31. doi: 10.1002/jmr.2327.

PMID:
24375581
14.

A comprehensive phylogenetic analysis of deadenylases.

Pavlopoulou A, Vlachakis D, Balatsos NA, Kossida S.

Evol Bioinform Online. 2013 Dec 2;9:491-7. doi: 10.4137/EBO.S12746. eCollection 2013.

15.

3D molecular modeling and evolutionary study of the Trypanosoma brucei DNA Topoisomerase IB, as a new emerging pharmacological target.

Vlachakis D, Pavlopoulou A, Roubelakis MG, Feidakis C, Anagnou NP, Kossida S.

Genomics. 2014 Jan;103(1):107-13. doi: 10.1016/j.ygeno.2013.11.008. Epub 2013 Dec 5.

PMID:
24316217
16.

3D Molecular Modelling Study of the H7N9 RNA-Dependent RNA Polymerase as an Emerging Pharmacological Target.

Vlachakis D, Karozou A, Kossida S.

Influenza Res Treat. 2013;2013:645348. doi: 10.1155/2013/645348. Epub 2013 Sep 25.

17.

Protein signatures using electrostatic molecular surfaces in harmonic space.

Carvalho CS, Vlachakis D, Tsiliki G, Megalooikonomou V, Kossida S.

PeerJ. 2013 Oct 22;1:e185. doi: 10.7717/peerj.185. eCollection 2013.

18.

Space constrained homology modelling: the paradigm of the RNA-dependent RNA polymerase of dengue (type II) virus.

Vlachakis D, Kontopoulos DG, Kossida S.

Comput Math Methods Med. 2013;2013:108910. doi: 10.1155/2013/108910. Epub 2013 Aug 6.

19.

Unraveling microalgal molecular interactions using evolutionary and structural bioinformatics.

Vlachakis D, Pavlopoulou A, Kazazi D, Kossida S.

Gene. 2013 Oct 10;528(2):109-19. doi: 10.1016/j.gene.2013.07.039. Epub 2013 Jul 28.

PMID:
23900196
20.

Gene fusion analysis in the battle against the African endemic sleeping sickness.

Trimpalis P, Koumandou VL, Pliakou E, Anagnou NP, Kossida S.

PLoS One. 2013 Jul 17;8(7):e68854. doi: 10.1371/journal.pone.0068854. Print 2013.

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