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Results: 1 to 20 of 27

1.

PoMo: An Allele Frequency-based Approach for Species Tree Estimation.

De Maio N, Schrempf D, Kosiol C.

Syst Biol. 2015 Jul 23. pii: syv048. [Epub ahead of print]

PMID:
26209413
2.

Gaussian process test for high-throughput sequencing time series: application to experimental evolution.

Topa H, Jónás Á, Kofler R, Kosiol C, Honkela A.

Bioinformatics. 2015 Jun 1;31(11):1762-70. doi: 10.1093/bioinformatics/btv014. Epub 2015 Jan 21.

3.

Complete genome sequences of pigeon adenovirus 1 and duck adenovirus 2 extend the number of species within the genus Aviadenovirus.

Marek A, Kaján GL, Kosiol C, Harrach B, Schlötterer C, Hess M.

Virology. 2014 Aug;462-463:107-14. doi: 10.1016/j.virol.2014.04.033. Epub 2014 Jun 25.

PMID:
24971703
4.

The life cycle of Drosophila orphan genes.

Palmieri N, Kosiol C, Schlötterer C.

Elife. 2014 Feb 19;3:e01311. doi: 10.7554/eLife.01311.

5.

Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii).

Ma X, Kelley JL, Eilertson K, Musharoff S, Degenhardt JD, Martins AL, Vinar T, Kosiol C, Siepel A, Gutenkunst RN, Bustamante CD.

PLoS One. 2013 Oct 23;8(10):e77175. doi: 10.1371/journal.pone.0077175. eCollection 2013.

6.

Whole-genome sequences of two turkey adenovirus types reveal the existence of two unknown lineages that merit the establishment of novel species within the genus Aviadenovirus.

Marek A, Ballmann MZ, Kosiol C, Harrach B, Schlötterer C, Hess M.

J Gen Virol. 2014 Jan;95(Pt 1):156-70. doi: 10.1099/vir.0.057711-0. Epub 2013 Sep 28.

PMID:
24077297
7.

Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models.

De Maio N, Schlötterer C, Kosiol C.

Mol Biol Evol. 2013 Oct;30(10):2249-62. doi: 10.1093/molbev/mst131. Epub 2013 Aug 1.

8.

The first whole genome sequence of a Fowl adenovirus B strain enables interspecies comparisons within the genus Aviadenovirus.

Marek A, Kosiol C, Harrach B, Kaján GL, Schlötterer C, Hess M.

Vet Microbiol. 2013 Sep 27;166(1-2):250-6. doi: 10.1016/j.vetmic.2013.05.017. Epub 2013 Jun 14.

PMID:
23830773
9.

Estimating empirical codon hidden Markov models.

De Maio N, Holmes I, Schlötterer C, Kosiol C.

Mol Biol Evol. 2013 Mar;30(3):725-36. doi: 10.1093/molbev/mss266. Epub 2012 Nov 27.

10.

Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura.

Palmieri N, Nolte V, Suvorov A, Kosiol C, Schlötterer C.

PLoS One. 2012;7(10):e46415. doi: 10.1371/journal.pone.0046415. Epub 2012 Oct 3.

11.

Selection on the protein-coding genome.

Kosiol C, Anisimova M.

Methods Mol Biol. 2012;856:113-40. doi: 10.1007/978-1-61779-585-5_5.

PMID:
22399457
12.

Markovian and non-Markovian protein sequence evolution: aggregated Markov process models.

Kosiol C, Goldman N.

J Mol Biol. 2011 Aug 26;411(4):910-23. doi: 10.1016/j.jmb.2011.06.005. Epub 2011 Jun 21.

13.

Comparative and demographic analysis of orang-utan genomes.

Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK.

Nature. 2011 Jan 27;469(7331):529-33. doi: 10.1038/nature09687.

14.

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals.

Kofler R, Orozco-terWengel P, De Maio N, Pandey RV, Nolte V, Futschik A, Kosiol C, Schlötterer C.

PLoS One. 2011 Jan 6;6(1):e15925. doi: 10.1371/journal.pone.0015925.

15.

Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation.

Janssen R, Le Gouar M, Pechmann M, Poulin F, Bolognesi R, Schwager EE, Hopfen C, Colbourne JK, Budd GE, Brown SJ, Prpic NM, Kosiol C, Vervoort M, Damen WG, Balavoine G, McGregor AP.

BMC Evol Biol. 2010 Dec 1;10:374. doi: 10.1186/1471-2148-10-374.

16.

Positive selection on apoptosis related genes.

da Fonseca RR, Kosiol C, Vinar T, Siepel A, Nielsen R.

FEBS Lett. 2010 Feb 5;584(3):469-76. doi: 10.1016/j.febslet.2009.12.022. Epub 2009 Dec 22. Review.

17.

The sequence and de novo assembly of the giant panda genome.

Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, Zhang Z, Zhang Y, Wang W, Li J, Wei F, Li H, Jian M, Li J, Zhang Z, Nielsen R, Li D, Gu W, Yang Z, Xuan Z, Ryder OA, Leung FC, Zhou Y, Cao J, Sun X, Fu Y, Fang X, Guo X, Wang B, Hou R, Shen F, Mu B, Ni P, Lin R, Qian W, Wang G, Yu C, Nie W, Wang J, Wu Z, Liang H, Min J, Wu Q, Cheng S, Ruan J, Wang M, Shi Z, Wen M, Liu B, Ren X, Zheng H, Dong D, Cook K, Shan G, Zhang H, Kosiol C, Xie X, Lu Z, Zheng H, Li Y, Steiner CC, Lam TT, Lin S, Zhang Q, Li G, Tian J, Gong T, Liu H, Zhang D, Fang L, Ye C, Zhang J, Hu W, Xu A, Ren Y, Zhang G, Bruford MW, Li Q, Ma L, Guo Y, An N, Hu Y, Zheng Y, Shi Y, Li Z, Liu Q, Chen Y, Zhao J, Qu N, Zhao S, Tian F, Wang X, Wang H, Xu L, Liu X, Vinar T, Wang Y, Lam TW, Yiu SM, Liu S, Zhang H, Li D, Huang Y, Wang X, Yang G, Jiang Z, Wang J, Qin N, Li L, Li J, Bolund L, Kristiansen K, Wong GK, Olson M, Zhang X, Li S, Yang H, Wang J, Wang J.

Nature. 2010 Jan 21;463(7279):311-7. doi: 10.1038/nature08696. Epub 2009 Dec 13. Erratum in: Nature. 2010 Feb 25;463(7284):1106.

18.

Investigating protein-coding sequence evolution with probabilistic codon substitution models.

Anisimova M, Kosiol C.

Mol Biol Evol. 2009 Feb;26(2):255-71. doi: 10.1093/molbev/msn232. Epub 2008 Oct 14.

19.

Patterns of positive selection in six Mammalian genomes.

Kosiol C, Vinar T, da Fonseca RR, Hubisz MJ, Bustamante CD, Nielsen R, Siepel A.

PLoS Genet. 2008 Aug 1;4(8):e1000144. doi: 10.1371/journal.pgen.1000144.

20.

Natural selection on genes that underlie human disease susceptibility.

Blekhman R, Man O, Herrmann L, Boyko AR, Indap A, Kosiol C, Bustamante CD, Teshima KM, Przeworski M.

Curr Biol. 2008 Jun 24;18(12):883-9. doi: 10.1016/j.cub.2008.04.074.

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