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Results: 1 to 20 of 25

1.

Complete genome sequences of pigeon adenovirus 1 and duck adenovirus 2 extend the number of species within the genus Aviadenovirus.

Marek A, Kaján GL, Kosiol C, Harrach B, Schlötterer C, Hess M.

Virology. 2014 Aug;462-463:107-14. doi: 10.1016/j.virol.2014.04.033. Epub 2014 Jun 25.

PMID:
24971703
[PubMed - in process]
2.

The life cycle of Drosophila orphan genes.

Palmieri N, Kosiol C, Schlötterer C.

Elife. 2014 Feb 19;3:e01311. doi: 10.7554/eLife.01311.

PMID:
24554240
[PubMed - in process]
Free PMC Article
3.

Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii).

Ma X, Kelley JL, Eilertson K, Musharoff S, Degenhardt JD, Martins AL, Vinar T, Kosiol C, Siepel A, Gutenkunst RN, Bustamante CD.

PLoS One. 2013 Oct 23;8(10):e77175. doi: 10.1371/journal.pone.0077175. eCollection 2013.

PMID:
24194868
[PubMed - in process]
Free PMC Article
4.

Whole-genome sequences of two turkey adenovirus types reveal the existence of two unknown lineages that merit the establishment of novel species within the genus Aviadenovirus.

Marek A, Ballmann MZ, Kosiol C, Harrach B, Schlötterer C, Hess M.

J Gen Virol. 2014 Jan;95(Pt 1):156-70. doi: 10.1099/vir.0.057711-0. Epub 2013 Sep 28.

PMID:
24077297
[PubMed - indexed for MEDLINE]
5.

Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models.

De Maio N, Schlötterer C, Kosiol C.

Mol Biol Evol. 2013 Oct;30(10):2249-62. doi: 10.1093/molbev/mst131. Epub 2013 Aug 1.

PMID:
23906727
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The first whole genome sequence of a Fowl adenovirus B strain enables interspecies comparisons within the genus Aviadenovirus.

Marek A, Kosiol C, Harrach B, Kaján GL, Schlötterer C, Hess M.

Vet Microbiol. 2013 Sep 27;166(1-2):250-6. doi: 10.1016/j.vetmic.2013.05.017. Epub 2013 Jun 14.

PMID:
23830773
[PubMed - indexed for MEDLINE]
7.

Estimating empirical codon hidden Markov models.

De Maio N, Holmes I, Schlötterer C, Kosiol C.

Mol Biol Evol. 2013 Mar;30(3):725-36. doi: 10.1093/molbev/mss266. Epub 2012 Nov 27.

PMID:
23188590
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura.

Palmieri N, Nolte V, Suvorov A, Kosiol C, Schlötterer C.

PLoS One. 2012;7(10):e46415. doi: 10.1371/journal.pone.0046415. Epub 2012 Oct 3.

PMID:
23056304
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Selection on the protein-coding genome.

Kosiol C, Anisimova M.

Methods Mol Biol. 2012;856:113-40. doi: 10.1007/978-1-61779-585-5_5.

PMID:
22399457
[PubMed - indexed for MEDLINE]
10.

Markovian and non-Markovian protein sequence evolution: aggregated Markov process models.

Kosiol C, Goldman N.

J Mol Biol. 2011 Aug 26;411(4):910-23. doi: 10.1016/j.jmb.2011.06.005. Epub 2011 Jun 21.

PMID:
21718704
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comparative and demographic analysis of orang-utan genomes.

Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK.

Nature. 2011 Jan 27;469(7331):529-33. doi: 10.1038/nature09687.

PMID:
21270892
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals.

Kofler R, Orozco-terWengel P, De Maio N, Pandey RV, Nolte V, Futschik A, Kosiol C, Schlötterer C.

PLoS One. 2011 Jan 6;6(1):e15925. doi: 10.1371/journal.pone.0015925.

PMID:
21253599
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation.

Janssen R, Le Gouar M, Pechmann M, Poulin F, Bolognesi R, Schwager EE, Hopfen C, Colbourne JK, Budd GE, Brown SJ, Prpic NM, Kosiol C, Vervoort M, Damen WG, Balavoine G, McGregor AP.

BMC Evol Biol. 2010 Dec 1;10:374. doi: 10.1186/1471-2148-10-374.

PMID:
21122121
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Positive selection on apoptosis related genes.

da Fonseca RR, Kosiol C, Vinar T, Siepel A, Nielsen R.

FEBS Lett. 2010 Feb 5;584(3):469-76. doi: 10.1016/j.febslet.2009.12.022. Epub 2009 Dec 22. Review.

PMID:
20026333
[PubMed - indexed for MEDLINE]
Free Article
15.

The sequence and de novo assembly of the giant panda genome.

Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, Zhang Z, Zhang Y, Wang W, Li J, Wei F, Li H, Jian M, Li J, Zhang Z, Nielsen R, Li D, Gu W, Yang Z, Xuan Z, Ryder OA, Leung FC, Zhou Y, Cao J, Sun X, Fu Y, Fang X, Guo X, Wang B, Hou R, Shen F, Mu B, Ni P, Lin R, Qian W, Wang G, Yu C, Nie W, Wang J, Wu Z, Liang H, Min J, Wu Q, Cheng S, Ruan J, Wang M, Shi Z, Wen M, Liu B, Ren X, Zheng H, Dong D, Cook K, Shan G, Zhang H, Kosiol C, Xie X, Lu Z, Zheng H, Li Y, Steiner CC, Lam TT, Lin S, Zhang Q, Li G, Tian J, Gong T, Liu H, Zhang D, Fang L, Ye C, Zhang J, Hu W, Xu A, Ren Y, Zhang G, Bruford MW, Li Q, Ma L, Guo Y, An N, Hu Y, Zheng Y, Shi Y, Li Z, Liu Q, Chen Y, Zhao J, Qu N, Zhao S, Tian F, Wang X, Wang H, Xu L, Liu X, Vinar T, Wang Y, Lam TW, Yiu SM, Liu S, Zhang H, Li D, Huang Y, Wang X, Yang G, Jiang Z, Wang J, Qin N, Li L, Li J, Bolund L, Kristiansen K, Wong GK, Olson M, Zhang X, Li S, Yang H, Wang J, Wang J.

Nature. 2010 Jan 21;463(7279):311-7. doi: 10.1038/nature08696. Epub 2009 Dec 13. Erratum in: Nature. 2010 Feb 25;463(7284):1106.

PMID:
20010809
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Investigating protein-coding sequence evolution with probabilistic codon substitution models.

Anisimova M, Kosiol C.

Mol Biol Evol. 2009 Feb;26(2):255-71. doi: 10.1093/molbev/msn232. Epub 2008 Oct 14.

PMID:
18922761
[PubMed - indexed for MEDLINE]
Free Article
17.

Patterns of positive selection in six Mammalian genomes.

Kosiol C, Vinar T, da Fonseca RR, Hubisz MJ, Bustamante CD, Nielsen R, Siepel A.

PLoS Genet. 2008 Aug 1;4(8):e1000144. doi: 10.1371/journal.pgen.1000144.

PMID:
18670650
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Natural selection on genes that underlie human disease susceptibility.

Blekhman R, Man O, Herrmann L, Boyko AR, Indap A, Kosiol C, Bustamante CD, Teshima KM, Przeworski M.

Curr Biol. 2008 Jun 24;18(12):883-9. doi: 10.1016/j.cub.2008.04.074.

PMID:
18571414
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Evolutionary and biomedical insights from the rhesus macaque genome.

Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, Hardison RC, Makova KD, Miller W, Milosavljevic A, Palermo RE, Siepel A, Sikela JM, Attaway T, Bell S, Bernard KE, Buhay CJ, Chandrabose MN, Dao M, Davis C, Delehaunty KD, Ding Y, Dinh HH, Dugan-Rocha S, Fulton LA, Gabisi RA, Garner TT, Godfrey J, Hawes AC, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Kirkness EF, Cree A, Fowler RG, Lee S, Lewis LR, Li Z, Liu YS, Moore SM, Muzny D, Nazareth LV, Ngo DN, Okwuonu GO, Pai G, Parker D, Paul HA, Pfannkoch C, Pohl CS, Rogers YH, Ruiz SJ, Sabo A, Santibanez J, Schneider BW, Smith SM, Sodergren E, Svatek AF, Utterback TR, Vattathil S, Warren W, White CS, Chinwalla AT, Feng Y, Halpern AL, Hillier LW, Huang X, Minx P, Nelson JO, Pepin KH, Qin X, Sutton GG, Venter E, Walenz BP, Wallis JW, Worley KC, Yang SP, Jones SM, Marra MA, Rocchi M, Schein JE, Baertsch R, Clarke L, Csürös M, Glasscock J, Harris RA, Havlak P, Jackson AR, Jiang H, Liu Y, Messina DN, Shen Y, Song HX, Wylie T, Zhang L, Birney E, Han K, Konkel MK, Lee J, Smit AF, Ullmer B, Wang H, Xing J, Burhans R, Cheng Z, Karro JE, Ma J, Raney B, She X, Cox MJ, Demuth JP, Dumas LJ, Han SG, Hopkins J, Karimpour-Fard A, Kim YH, Pollack JR, Vinar T, Addo-Quaye C, Degenhardt J, Denby A, Hubisz MJ, Indap A, Kosiol C, Lahn BT, Lawson HA, Marklein A, Nielsen R, Vallender EJ, Clark AG, Ferguson B, Hernandez RD, Hirani K, Kehrer-Sawatzki H, Kolb J, Patil S, Pu LL, Ren Y, Smith DG, Wheeler DA, Schenck I, Ball EV, Chen R, Cooper DN, Giardine B, Hsu F, Kent WJ, Lesk A, Nelson DL, O'brien WE, Prüfer K, Stenson PD, Wallace JC, Ke H, Liu XM, Wang P, Xiang AP, Yang F, Barber GP, Haussler D, Karolchik D, Kern AD, Kuhn RM, Smith KE, Zwieg AS.

Science. 2007 Apr 13;316(5822):222-34.

PMID:
17431167
[PubMed - indexed for MEDLINE]
Free Article
20.

An empirical codon model for protein sequence evolution.

Kosiol C, Holmes I, Goldman N.

Mol Biol Evol. 2007 Jul;24(7):1464-79. Epub 2007 Mar 30. Erratum in: Mol Biol Evol. 2007 Sep;24(9):2151.

PMID:
17400572
[PubMed - indexed for MEDLINE]
Free Article

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