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Results: 1 to 20 of 64

1.

Genome Annotation Provides Insight into Carbon Monoxide and Hydrogen Metabolism in Rubrivivax gelatinosus.

Wawrousek K, Noble S, Korlach J, Chen J, Eckert C, Yu J, Maness PC.

PLoS One. 2014 Dec 5;9(12):e114551. doi: 10.1371/journal.pone.0114551. eCollection 2014.

PMID:
25479613
[PubMed - in process]
Free PMC Article
2.

Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in Coprinopsis cinerea.

Chavez L, Huang Y, Luong K, Agarwal S, Iyer LM, Pastor WA, Hench VK, Frazier-Bowers SA, Korol E, Liu S, Tahiliani M, Wang Y, Clark TA, Korlach J, Pukkila PJ, Aravind L, Rao A.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):E5149-58. doi: 10.1073/pnas.1419513111. Epub 2014 Nov 18.

PMID:
25406324
[PubMed - in process]
3.

Resolving the complexity of the human genome using single-molecule sequencing.

Chaisson MJ, Huddleston J, Dennis MY, Sudmant PH, Malig M, Hormozdiari F, Antonacci F, Surti U, Sandstrom R, Boitano M, Landolin JM, Stamatoyannopoulos JA, Hunkapiller MW, Korlach J, Eichler EE.

Nature. 2014 Nov 10. doi: 10.1038/nature13907. [Epub ahead of print]

PMID:
25383537
[PubMed - as supplied by publisher]
4.

Comparative genomics of the Campylobacter lari group.

Miller WG, Yee E, Chapman MH, Smith TP, Bono JL, Huynh S, Parker CT, Vandamme P, Luong K, Korlach J.

Genome Biol Evol. 2014 Nov 8. pii: evu249. [Epub ahead of print]

PMID:
25381664
[PubMed - as supplied by publisher]
Free Article
5.

First Fully Closed Genome Sequence of Salmonella enterica subsp. enterica Serovar Cubana Associated with a Food-Borne Outbreak.

Hoffmann M, Muruvanda T, Pirone C, Korlach J, Timme R, Payne J, Evans P, Meng J, Brown EW, Allard MW.

Genome Announc. 2014 Oct 30;2(5). pii: e01112-14. doi: 10.1128/genomeA.01112-14.

PMID:
25359917
[PubMed]
Free PMC Article
6.

A random six-phase switch regulates pneumococcal virulence via global epigenetic changes.

Manso AS, Chai MH, Atack JM, Furi L, De Ste Croix M, Haigh R, Trappetti C, Ogunniyi AD, Shewell LK, Boitano M, Clark TA, Korlach J, Blades M, Mirkes E, Gorban AN, Paton JC, Jennings MP, Oggioni MR.

Nat Commun. 2014 Sep 30;5:5055. doi: 10.1038/ncomms6055.

PMID:
25268848
[PubMed - in process]
Free PMC Article
7.

Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae.

Conlan S, Thomas PJ, Deming C, Park M, Lau AF, Dekker JP, Snitkin ES, Clark TA, Luong K, Song Y, Tsai YC, Boitano M, Dayal J, Brooks SY, Schmidt B, Young AC, Thomas JW, Bouffard GG, Blakesley RW; NISC Comparative Sequencing Program, Mullikin JC, Korlach J, Henderson DK, Frank KM, Palmore TN, Segre JA.

Sci Transl Med. 2014 Sep 17;6(254):254ra126. doi: 10.1126/scitranslmed.3009845.

PMID:
25232178
[PubMed - in process]
8.

Reversible positioning of single molecules inside zero-mode waveguides.

Larkin J, Foquet M, Turner SW, Korlach J, Wanunu M.

Nano Lett. 2014 Oct 8;14(10):6023-9. doi: 10.1021/nl503134x. Epub 2014 Sep 15.

PMID:
25209321
[PubMed - in process]
9.

ModM DNA methyltransferase methylome analysis reveals a potential role for Moraxella catarrhalis phasevarions in otitis media.

Blakeway LV, Power PM, Jen FE, Worboys SR, Boitano M, Clark TA, Korlach J, Bakaletz LO, Jennings MP, Peak IR, Seib KL.

FASEB J. 2014 Dec;28(12):5197-207. doi: 10.1096/fj.14-256578. Epub 2014 Sep 2.

PMID:
25183669
[PubMed - in process]
10.

Whole-genome assembly of Klebsiella pneumoniae coproducing NDM-1 and OXA-232 carbapenemases using single-molecule, real-time sequencing.

Doi Y, Hazen TH, Boitano M, Tsai YC, Clark TA, Korlach J, Rasko DA.

Antimicrob Agents Chemother. 2014 Oct;58(10):5947-53. doi: 10.1128/AAC.03180-14. Epub 2014 Jul 28.

PMID:
25070096
[PubMed - in process]
11.

Improved performance of the PacBio SMRT technology for 16S rDNA sequencing.

Mosher JJ, Bowman B, Bernberg EL, Shevchenko O, Kan J, Korlach J, Kaplan LA.

J Microbiol Methods. 2014 Sep;104:59-60. doi: 10.1016/j.mimet.2014.06.012. Epub 2014 Jun 27.

PMID:
24978594
[PubMed - in process]
12.

Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences.

Cao B, Chen C, DeMott MS, Cheng Q, Clark TA, Xiong X, Zheng X, Butty V, Levine SS, Yuan G, Boitano M, Luong K, Song Y, Zhou X, Deng Z, Turner SW, Korlach J, You D, Wang L, Chen S, Dedon PC.

Nat Commun. 2014 Jun 5;5:3951. doi: 10.1038/ncomms4951.

PMID:
24899568
[PubMed - in process]
13.

Complete Genome Sequences of Two Escherichia coli O145:H28 Outbreak Strains of Food Origin.

Cooper KK, Mandrell RE, Louie JW, Korlach J, Clark TA, Parker CT, Huynh S, Chain PS, Ahmed S, Carter MQ.

Genome Announc. 2014 May 22;2(3). pii: e00482-14. doi: 10.1128/genomeA.00482-14.

PMID:
24855308
[PubMed]
Free PMC Article
14.

Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis.

O' Connell Motherway M, Watson D, Bottacini F, Clark TA, Roberts RJ, Korlach J, Garault P, Chervaux C, van Hylckama Vlieg JE, Smokvina T, van Sinderen D.

PLoS One. 2014 Apr 17;9(4):e94875. doi: 10.1371/journal.pone.0094875. eCollection 2014.

PMID:
24743599
[PubMed - in process]
Free PMC Article
15.

Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken Breast.

Hoffmann M, Muruvanda T, Allard MW, Korlach J, Roberts RJ, Timme R, Payne J, McDermott PF, Evans P, Meng J, Brown EW, Zhao S.

Genome Announc. 2014 Apr 3;2(2). pii: e00294-14. doi: 10.1128/genomeA.00294-14. No abstract available.

PMID:
24699967
[PubMed]
Free PMC Article
16.

Fully Assembled Genome Sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992.

Allard MW, Muruvanda T, Strain E, Timme R, Luo Y, Wang C, Keys CE, Payne J, Cooper T, Luong K, Song Y, Chin CS, Korlach J, Roberts RJ, Evans P, Musser SM, Brown EW.

Genome Announc. 2014 Apr 3;2(2). pii: e00293-14. doi: 10.1128/genomeA.00293-14. No abstract available.

PMID:
24699966
[PubMed]
Free PMC Article
17.

Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum.

Debruyn JM, Radosevich M, Wommack KE, Polson SW, Hauser LJ, Fawaz MN, Korlach J, Tsai YC.

Genome Announc. 2014 Apr 3;2(2). pii: e00226-14. doi: 10.1128/genomeA.00226-14.

PMID:
24699952
[PubMed]
Free PMC Article
18.

Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever.

Harhay GP, McVey DS, Koren S, Phillippy AM, Bono J, Harhay DM, Clawson ML, Heaton MP, Chitko-McKown CG, Korlach J, Smith TP.

Genome Announc. 2014 Feb 13;2(1). pii: e00084-14. doi: 10.1128/genomeA.00084-14.

PMID:
24526647
[PubMed]
Free PMC Article
19.

Novel giant siphovirus from Bacillus anthracis features unusual genome characteristics.

Ganz HH, Law C, Schmuki M, Eichenseher F, Calendar R, Loessner MJ, Getz WM, Korlach J, Beyer W, Klumpp J.

PLoS One. 2014 Jan 27;9(1):e85972. doi: 10.1371/journal.pone.0085972. eCollection 2014.

PMID:
24475065
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Reconstructing complex regions of genomes using long-read sequencing technology.

Huddleston J, Ranade S, Malig M, Antonacci F, Chaisson M, Hon L, Sudmant PH, Graves TA, Alkan C, Dennis MY, Wilson RK, Turner SW, Korlach J, Eichler EE.

Genome Res. 2014 Apr;24(4):688-96. doi: 10.1101/gr.168450.113. Epub 2014 Jan 13.

PMID:
24418700
[PubMed - indexed for MEDLINE]
Free PMC Article

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