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Results: 1 to 20 of 126

1.

High-coverage sequencing and annotated assemblies of the budgerigar genome.

Ganapathy G, Howard JT, Ward JM, Li J, Li B, Li Y, Xiong Y, Zhang Y, Zhou S, Schwartz DC, Schatz M, Aboukhalil R, Fedrigo O, Bukovnik L, Wang T, Wray G, Rasolonjatovo I, Winer R, Knight JR, Koren S, Warren WC, Zhang G, Phillippy AM, Jarvis ED.

Gigascience. 2014 Jul 8;3:11. doi: 10.1186/2047-217X-3-11. eCollection 2014.

PMID:
25061512
[PubMed]
Free PMC Article
2.

Automated ensemble assembly and validation of microbial genomes.

Koren S, Treangen TJ, Hill CM, Pop M, Phillippy AM.

BMC Bioinformatics. 2014 May 3;15:126. doi: 10.1186/1471-2105-15-126.

PMID:
24884846
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres.

Swan BK, Chaffin MD, Martinez-Garcia M, Morrison HG, Field EK, Poulton NJ, Masland ED, Harris CC, Sczyrba A, Chain PS, Koren S, Woyke T, Stepanauskas R.

PLoS One. 2014 Apr 17;9(4):e95380. doi: 10.1371/journal.pone.0095380. eCollection 2014.

PMID:
24743558
[PubMed - in process]
Free PMC Article
4.

Planning target volume-to-skin proximity for head-and-neck intensity modulated radiation therapy treatment planning.

Price RA Jr, Koren S, Veltchev I, Hossain M, Lin MH, Galloway T, Flanagan P, Haber J, Ma CM.

Pract Radiat Oncol. 2014 Jan-Feb;4(1):e21-9. doi: 10.1016/j.prro.2013.04.002. Epub 2013 May 21.

PMID:
24621428
[PubMed - in process]
5.

Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle with Shipping Fever.

Harhay GP, Murray RW, Lubbers B, Griffin D, Koren S, Phillippy AM, Harhay DM, Bono J, Clawson ML, Heaton MP, Chitko-McKown CG, Smith TP.

Genome Announc. 2014 Feb 13;2(1). pii: e00088-14. doi: 10.1128/genomeA.00088-14.

PMID:
24526648
[PubMed]
Free PMC Article
6.

Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever.

Harhay GP, McVey DS, Koren S, Phillippy AM, Bono J, Harhay DM, Clawson ML, Heaton MP, Chitko-McKown CG, Korlach J, Smith TP.

Genome Announc. 2014 Feb 13;2(1). pii: e00084-14. doi: 10.1128/genomeA.00084-14.

PMID:
24526647
[PubMed]
Free PMC Article
7.

Aiming for better glucose control: is HbA(1c) of 7% the 'holy grail'? The clinical approach or seven clinical questions about 7.

Koren S, Rapoport MJ.

Diabetes Metab Res Rev. 2014 Jul;30(5):346-9. doi: 10.1002/dmrr.2532.

PMID:
24510443
[PubMed - in process]
8.

Effects of hyperbaric oxygen on blood glucose levels in patients with diabetes mellitus, stroke or traumatic brain injury and healthy volunteers: a prospective, crossover, controlled trial.

Peleg RK, Fishlev G, Bechor Y, Bergan J, Friedman M, Koren S, Tirosh A, Efrati S.

Diving Hyperb Med. 2013 Dec;43(4):218-21.

PMID:
24510327
[PubMed - indexed for MEDLINE]
9.

Expression of PIK3CA mutant E545K in the mammary gland induces heterogeneous tumors but is less potent than mutant H1047R.

Meyer DS, Koren S, Leroy C, Brinkhaus H, Müller U, Klebba I, Müller M, Cardiff RD, Bentires-Alj M.

Oncogenesis. 2013 Sep 30;2:e74. doi: 10.1038/oncsis.2013.38.

PMID:
24080956
[PubMed]
Free PMC Article
10.

Detection of the GPI-anchorless prion protein fragment PrP226* in human brain.

Dvorakova E, Vranac T, Janouskova O, Černilec M, Koren S, Lukan A, Nováková J, Matej R, Holada K, Čurin Šerbec V.

BMC Neurol. 2013 Sep 25;13:126. doi: 10.1186/1471-2377-13-126.

PMID:
24063733
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Reducing assembly complexity of microbial genomes with single-molecule sequencing.

Koren S, Harhay GP, Smith TP, Bono JL, Harhay DM, Mcvey SD, Radune D, Bergman NH, Phillippy AM.

Genome Biol. 2013;14(9):R101.

PMID:
24034426
[PubMed - in process]
Free PMC Article
12.

High similarity of novel orthoreovirus detected in a child hospitalized with acute gastroenteritis to mammalian orthoreoviruses found in bats in Europe.

Steyer A, Gutiérrez-Aguire I, Kolenc M, Koren S, Kutnjak D, Pokorn M, Poljšak-Prijatelj M, Racki N, Ravnikar M, Sagadin M, Fratnik Steyer A, Toplak N.

J Clin Microbiol. 2013 Nov;51(11):3818-25. doi: 10.1128/JCM.01531-13. Epub 2013 Sep 11.

PMID:
24025904
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Interpreting the results of the Semmes-Weinstein monofilament test: accounting for false-positive answers in the international consensus on the diabetic foot protocol by a new model.

Slater RA, Koren S, Ramot Y, Buchs A, Rapoport MJ.

Diabetes Metab Res Rev. 2014 Jan;30(1):77-80. doi: 10.1002/dmrr.2465.

PMID:
23996640
[PubMed - indexed for MEDLINE]
14.

De novo likelihood-based measures for comparing genome assemblies.

Ghodsi M, Hill CM, Astrovskaya I, Lin H, Sommer DD, Koren S, Pop M.

BMC Res Notes. 2013 Aug 22;6:334. doi: 10.1186/1756-0500-6-334.

PMID:
23965294
[PubMed - in process]
Free PMC Article
15.

3D inpatient dose reconstruction from the PET-CT imaging of 90Y microspheres for metastatic cancer to the liver: feasibility study.

Fourkal E, Veltchev I, Lin M, Koren S, Meyer J, Doss M, Yu JQ.

Med Phys. 2013 Aug;40(8):081702. doi: 10.1118/1.4810939.

PMID:
23927299
[PubMed - indexed for MEDLINE]
16.

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, Durbin R, Earl D, Emrich S, Fedotov P, Fonseca NA, Ganapathy G, Gibbs RA, Gnerre S, Godzaridis E, Goldstein S, Haimel M, Hall G, Haussler D, Hiatt JB, Ho IY, Howard J, Hunt M, Jackman SD, Jaffe DB, Jarvis ED, Jiang H, Kazakov S, Kersey PJ, Kitzman JO, Knight JR, Koren S, Lam TW, Lavenier D, Laviolette F, Li Y, Li Z, Liu B, Liu Y, Luo R, Maccallum I, Macmanes MD, Maillet N, Melnikov S, Naquin D, Ning Z, Otto TD, Paten B, Paulo OS, Phillippy AM, Pina-Martins F, Place M, Przybylski D, Qin X, Qu C, Ribeiro FJ, Richards S, Rokhsar DS, Ruby JG, Scalabrin S, Schatz MC, Schwartz DC, Sergushichev A, Sharpe T, Shaw TI, Shendure J, Shi Y, Simpson JT, Song H, Tsarev F, Vezzi F, Vicedomini R, Vieira BM, Wang J, Worley KC, Yin S, Yiu SM, Yuan J, Zhang G, Zhang H, Zhou S, Korf IF.

Gigascience. 2013 Jul 22;2(1):10. doi: 10.1186/2047-217X-2-10.

PMID:
23870653
[PubMed]
Free PMC Article
17.

A noncanonical, GSK3-independent pathway controls postprandial hepatic glycogen deposition.

Wan M, Leavens KF, Hunter RW, Koren S, von Wilamowitz-Moellendorff A, Lu M, Satapati S, Chu Q, Sakamoto K, Burgess SC, Birnbaum MJ.

Cell Metab. 2013 Jul 2;18(1):99-105. doi: 10.1016/j.cmet.2013.06.001.

PMID:
23823480
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Complete Closed Genome Sequences of Mannheimia haemolytica Serotypes A1 and A6, Isolated from Cattle.

Harhay GP, Koren S, Phillippy AM, McVey DS, Kuszak J, Clawson ML, Harhay DM, Heaton MP, Chitko-McKown CG, Smith TP.

Genome Announc. 2013 May 16;1(3). pii: e00188-13. doi: 10.1128/genomeA.00188-13.

PMID:
23682137
[PubMed]
Free PMC Article
19.

Measurement comparison and Monte Carlo analysis for volumetric-modulated arc therapy (VMAT) delivery verification using the ArcCHECK dosimetry system.

Lin MH, Koren S, Veltchev I, Li J, Wang L, Price RA, Ma CM.

J Appl Clin Med Phys. 2013 May 6;14(2):3929. doi: 10.1120/jacmp.v14i2.3929.

PMID:
23470927
[PubMed - indexed for MEDLINE]
20.

Mouse models of PIK3CA mutations: one mutation initiates heterogeneous mammary tumors.

Koren S, Bentires-Alj M.

FEBS J. 2013 Jun;280(12):2758-65. doi: 10.1111/febs.12175. Epub 2013 Mar 1. Review.

PMID:
23384338
[PubMed - indexed for MEDLINE]

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