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Results: 1 to 20 of 679

1.

Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes.

Makarova KS, Wolf YI, Forterre P, Prangishvili D, Krupovic M, Koonin EV.

Extremophiles. 2014 Aug 12. [Epub ahead of print]

PMID:
25113822
[PubMed - as supplied by publisher]
2.

Evolution of replicative DNA polymerases in archaea and their contributions to the eukaryotic replication machinery.

Makarova KS, Krupovic M, Koonin EV.

Front Microbiol. 2014 Jul 21;5:354. doi: 10.3389/fmicb.2014.00354. eCollection 2014. Review.

PMID:
25101062
[PubMed]
Free PMC Article
3.

Origin of giant viruses from smaller DNA viruses not from a fourth domain of cellular life.

Yutin N, Wolf YI, Koonin EV.

Virology. 2014 Jul 17. pii: S0042-6822(14)00300-6. doi: 10.1016/j.virol.2014.06.032. [Epub ahead of print]

PMID:
25042053
[PubMed - as supplied by publisher]
4.

Calorie Restriction à Lamarck.

Koonin EV.

Cell. 2014 Jul 17;158(2):237-8. doi: 10.1016/j.cell.2014.07.004.

PMID:
25036622
[PubMed - in process]
5.

Impairment of translation in neurons as a putative causative factor for autism.

Poliakov E, Koonin EV, Rogozin IB.

Biol Direct. 2014 Jul 10;9(1):16. doi: 10.1186/1745-6150-9-16.

PMID:
25011470
[PubMed - in process]
Free PMC Article
6.

Pseudo-chaotic oscillations in CRISPR-virus coevolution predicted by bifurcation analysis.

Berezovskaya FS, Wolf YI, Koonin EV, Karev GP.

Biol Direct. 2014 Jul 2;9(1):13. doi: 10.1186/1745-6150-9-13.

PMID:
24986220
[PubMed - in process]
Free PMC Article
7.
8.

Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity.

Krupovic M, Makarova KS, Forterre P, Prangishvili D, Koonin EV.

BMC Biol. 2014 May 19;12:36. doi: 10.1186/1741-7007-12-36.

PMID:
24884953
[PubMed - in process]
Free PMC Article
9.

Virus world as an evolutionary network of viruses and capsidless selfish elements.

Koonin EV, Dolja VV.

Microbiol Mol Biol Rev. 2014 Jun;78(2):278-303. doi: 10.1128/MMBR.00049-13.

PMID:
24847023
[PubMed - in process]
10.

CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems.

Makarova KS, Anantharaman V, Grishin NV, Koonin EV, Aravind L.

Front Genet. 2014 Apr 30;5:102. doi: 10.3389/fgene.2014.00102. eCollection 2014.

PMID:
24817877
[PubMed]
Free PMC Article
11.

Universal pacemaker of genome evolution in animals and fungi and variation of evolutionary rates in diverse organisms.

Snir S, Wolf YI, Koonin EV.

Genome Biol Evol. 2014 May 7;6(6):1268-78. doi: 10.1093/gbe/evu091.

PMID:
24812293
[PubMed - in process]
Free PMC Article
12.

Evolution at protein ends: major contribution of alternative transcription initiation and termination to the transcriptome and proteome diversity in mammals.

Shabalina SA, Ogurtsov AY, Spiridonov NA, Koonin EV.

Nucleic Acids Res. 2014;42(11):7132-44. doi: 10.1093/nar/gku342. Epub 2014 May 3.

PMID:
24792168
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Conservation of major and minor jelly-roll capsid proteins in Polinton (Maverick) transposons suggests that they are bona fide viruses.

Krupovic M, Bamford DH, Koonin EV.

Biol Direct. 2014 Apr 29;9:6. doi: 10.1186/1745-6150-9-6.

PMID:
24773695
[PubMed - in process]
Free PMC Article
14.

The origins of cellular life.

Koonin EV.

Antonie Van Leeuwenhoek. 2014 Jul;106(1):27-41. doi: 10.1007/s10482-014-0169-5. Epub 2014 Apr 23.

PMID:
24756907
[PubMed - in process]
15.

Classification and evolution of type II CRISPR-Cas systems.

Chylinski K, Makarova KS, Charpentier E, Koonin EV.

Nucleic Acids Res. 2014;42(10):6091-105. doi: 10.1093/nar/gku241. Epub 2014 Apr 11. Review.

PMID:
24728998
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The dispersed archaeal eukaryome and the complex archaeal ancestor of eukaryotes.

Koonin EV, Yutin N.

Cold Spring Harb Perspect Biol. 2014 Apr 1;6(4):a016188. doi: 10.1101/cshperspect.a016188.

PMID:
24691961
[PubMed - in process]
17.

Coupling between protein level selection and codon usage optimization in the evolution of bacteria and archaea.

Ran W, Kristensen DM, Koonin EV.

MBio. 2014 Mar 25;5(2):e00956-14. doi: 10.1128/mBio.00956-14.

PMID:
24667707
[PubMed - in process]
Free PMC Article
18.

Classification and quantification of bacteriophage taxa in human gut metagenomes.

Waller AS, Yamada T, Kristensen DM, Kultima JR, Sunagawa S, Koonin EV, Bork P.

ISME J. 2014 Jul;8(7):1391-402. doi: 10.1038/ismej.2014.30. Epub 2014 Mar 13. Erratum in: ISME J. 2014 Jul;8(7):1551-2.

PMID:
24621522
[PubMed - in process]
19.

Gene family level comparative analysis of gene expression in mammals validates the ortholog conjecture.

Rogozin IB, Managadze D, Shabalina SA, Koonin EV.

Genome Biol Evol. 2014 Apr;6(4):754-62. doi: 10.1093/gbe/evu051.

PMID:
24610837
[PubMed - in process]
Free Article
20.

Carl Woese's vision of cellular evolution and the domains of life.

Koonin EV.

RNA Biol. 2014 Mar 1;11(3):197-204. Epub 2014 Jan 16. Review.

PMID:
24572480
[PubMed - as supplied by publisher]
Free Article

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