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Results: 1 to 20 of 709

1.

Annotation and Classification of CRISPR-Cas Systems.

Makarova KS, Koonin EV.

Methods Mol Biol. 2015;1311:47-75. doi: 10.1007/978-1-4939-2687-9_4.

PMID:
25981466
2.

Gene-specific selective sweeps in bacteria and archaea caused by negative frequency-dependent selection.

Takeuchi N, Cordero OX, Koonin EV, Kaneko K.

BMC Biol. 2015 Apr 16;13(1):20. doi: 10.1186/s12915-015-0131-7.

3.

Evolution of the RAG1-RAG2 locus: both proteins came from the same transposon.

Kapitonov VV, Koonin EV.

Biol Direct. 2015 Apr 28;10(1):20. doi: 10.1186/s13062-015-0055-8.

5.

A new family of hybrid virophages from an animal gut metagenome.

Yutin N, Kapitonov VV, Koonin EV.

Biol Direct. 2015 Apr 25;10(1):19. doi: 10.1186/s13062-015-0054-9.

6.

Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases.

Byrne RT, Jenkins HT, Peters DT, Whelan F, Stowell J, Aziz N, Kasatsky P, Rodnina MV, Koonin EV, Konevega AL, Antson AA.

Proc Natl Acad Sci U S A. 2015 May 12;112(19):6033-7. doi: 10.1073/pnas.1500161112. Epub 2015 Apr 22.

PMID:
25902496
7.

The Turbulent Network Dynamics of Microbial Evolution and the Statistical Tree of Life.

Koonin EV.

J Mol Evol. 2015 Apr 18. [Epub ahead of print]

PMID:
25894542
8.

Reviewer acknowledgement.

Koonin EV, Landweber LF, Lipman D.

Biol Direct. 2015 Feb 22;10(1):7. doi: 10.1186/s13062-015-0038-9.

9.

Plant viruses of the Amalgaviridae family evolved via recombination between viruses with double-stranded and negative-strand RNA genomes.

Krupovic M, Dolja VV, Koonin EV.

Biol Direct. 2015 Mar 29;10(1):12. doi: 10.1186/s13062-015-0047-8.

10.

Babela massiliensis, a representative of a widespread bacterial phylum with unusual adaptations to parasitism in amoebae.

Pagnier I, Yutin N, Croce O, Makarova KS, Wolf YI, Benamar S, Raoult D, Koonin EV, La Scola B.

Biol Direct. 2015 Mar 31;10(1):13. doi: 10.1186/s13062-015-0043-z.

11.

Immunity, suicide or both? Ecological determinants for the combined evolution of anti-pathogen defense systems.

Iranzo J, Lobkovsky AE, Wolf YI, Koonin EV.

BMC Evol Biol. 2015 Mar 13;15:43. doi: 10.1186/s12862-015-0324-2.

12.

Multiple layers of chimerism in a single-stranded DNA virus discovered by deep sequencing.

Krupovic M, Zhi N, Li J, Hu G, Koonin EV, Wong S, Shevchenko S, Zhao K, Young NS.

Genome Biol Evol. 2015 Apr 2;7(4):993-1001. doi: 10.1093/gbe/evv034.

13.

In vivo genome editing using Staphylococcus aureus Cas9.

Ran FA, Cong L, Yan WX, Scott DA, Gootenberg JS, Kriz AJ, Zetsche B, Shalem O, Wu X, Makarova KS, Koonin EV, Sharp PA, Zhang F.

Nature. 2015 Apr 9;520(7546):186-91. doi: 10.1038/nature14299. Epub 2015 Apr 1.

PMID:
25830891
14.

Origins and evolution of viruses of eukaryotes: The ultimate modularity.

Koonin EV, Dolja VV, Krupovic M.

Virology. 2015 May;479-480C:2-25. doi: 10.1016/j.virol.2015.02.039. Epub 2015 Mar 12. Review.

16.

Evolution of double-stranded DNA viruses of eukaryotes: from bacteriophages to transposons to giant viruses.

Koonin EV, Krupovic M, Yutin N.

Ann N Y Acad Sci. 2015 Apr;1341:10-24. doi: 10.1111/nyas.12728. Epub 2015 Feb 27.

17.

No evidence of inhibition of horizontal gene transfer by CRISPR-Cas on evolutionary timescales.

Gophna U, Kristensen DM, Wolf YI, Popa O, Drevet C, Koonin EV.

ISME J. 2015 Feb 24. doi: 10.1038/ismej.2015.20. [Epub ahead of print]

PMID:
25710183
18.

Classification of prokaryotic genetic replicators: between selfishness and altruism.

Jalasvuori M, Koonin EV.

Ann N Y Acad Sci. 2015 Apr;1341:96-105. doi: 10.1111/nyas.12696. Epub 2015 Feb 19.

PMID:
25703428
19.
20.

Estimation of prokaryotic supergenome size and composition from gene frequency distributions.

Lobkovsky AE, Wolf YI, Koonin EV.

BMC Genomics. 2014;15 Suppl 6:S14. doi: 10.1186/1471-2164-15-S6-S14. Epub 2014 Oct 17.

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